#NEXUS [saved by seaview on Tue May 23 13:16:27 2006] BEGIN TAXA; DIMENSIONS NTAX=92; TAXLABELS 'Bactero_fr' 'Pasteur_mu' 'Gemmata_ob' 'Plancto_br' 'Thermoa_te' 'Sulfolo_ac' 'Sulfolo_so' 'Acidian_in' 'Thermof_pe' 'Aeropyr_pe' 'Desulfu_mo' 'Nanoarc_eq' 'Methano_ka' 'Pyrococ_ab' 'Pyrococ_ho' 'Thermoc_ce' 'Pyrococ_fu' 'Archaeo_fu' 'Methano_ja' 'Methano_va' 'Methano_th' 'Methano_ac' 'Methano_ma' 'Haloarc_ma' 'Natrono_ma' 'Halofer_me' 'Thermop_ac' 'Mycopla_ge' 'Ureapla_ur' 'Borreli_bu' 'Trepone_pa' 'Chlamyd_mu' 'Chlamyd_tr' 'Chlorob_li' 'Flavoba_od' 'Buchner_ap' 'Escheri_co' 'Vibrio_ch' 'Pseudom_ae' 'Xylella_fa' 'Rickett_pr' 'Campylo_je' 'Helicob_py' 'Bacillu_su' 'Staphyl_au' 'Lactoco_la' 'Leucono_me' 'Clostri_bo' 'Synecho_sp' 'Mycobac_le' 'Strepto_co' 'Pirellu_ma' 'Aquifex_ae' 'Thermus_th' 'Thermot_ma' 'Deinoco_ra' 'Guillar_th' 'Oryza_sa' 'Arabido_th' 'Acorus_gr' 'Hylocom_sp' 'Andreae_ni' 'Chlorel_el' 'Cryptoc_ne' 'Candida_al' 'Sacchar_ce' 'Schizos_po' 'Phytoph_me' 'Toxopla_go' 'Scytosi_lo' 'Homo_sa' 'Latimer_ch' 'Squalus_ac' 'Branchi_fl' 'Tetrahy_py' 'Tetrahy_th' 'Euplote_ae' 'Onikusa_pr' 'Gelidiu_ca' 'Drosoph_me' 'Caenorh_el' 'Plasmod_fa' 'Girardi_ti' 'Entamoe_hi' 'Trypano_cr' 'Trypano_br' 'Dictyos_di' 'Gracila_ve' 'Ciona_in' 'Euglena_gr' 'Giardia_ar' 'Giardia_in' ; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=2924; FORMAT DATATYPE=NUCLEOTIDE GAP=- ; MATRIX [1] 'Bactero_fr' CCGGCGCACGGGUGAGUAACACGUAUCCAACC-UGCCCUUUACUC--GGGGAUAGCCUUU CGAAAGAAAGAUUAAUACCCGAUCGGUAAAGGAUGGGGAUGCGUUCCAUUAGGUUGUUGG UGAGGUAACGGCUCACCAAGCCUUCGAUGGAUAGGGGUUCUGAGAGGAAGGUCCCCCACA UUGGAACUGAGACACGGUCCAAACUCCUACGGGAGGCAGCAGUGAGGAAUAUUGGUCAAU GGGCGCUAGCCUGAACCAGCCAAGUAGCGUGAAGGAAUAAGGAUCGGCUAACUCCG-UGC CAGCAGCCGCGGUAAUAC-GGAGGAUCCGAGCGUUAUCCGGAUUUAUUGGGUUUAAAGG- GAGCGUAGGUGGU--GAC--------ACU-----GAU--GCUCGAAA-GUGUGGGUAUCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACACAG-UAAACGAUGAGCGAAAGCA--UUA AGCC-------A--CCUGGGGAGUA-CGCC----GGCAACGGUGAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGAGGAACAUGUGGUUUAAUUCGAU-GAUACG--CG AGGAACCUUACCUU---------------------------------------------- --------AAAU-----GAA------GGUGCUGCAUGGUUGUCGUCAGC-UCGUGCC-GU GAGGUGUCGGCUUA-AGUGCCAUAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAAUCAGCACGGCCC--------UUACGGGGC-UAC-ACACGUGUUACAAUGGACAGA AG-GAGUUCGGAUCGAAGUCUGCAA---CCCGACUUCGUGAAGC-----------UGGAU UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCAAGC-CAUGGGAGCCU--AGGGUAAAAC-------------------- --------------------------GGCGGATGCCTTGGGCGATGAAGGACGTGCGATA AGCCGGGTAGGTGTTTCCG-AATGGGACAAGAACTGAAA-CATCTTAGTAC-CTGCAGGA AAAGAAA--ATAAAT---GATTCCCCTAGT-AGTGGCGAGCGAACCTGAGTAGCAAGGCT AAATACTGACCGATAGCGA-ACGT-ACTGTGAAGG--A-AAGGTG-AAAAGCACTTCAGA AGAGTGAATAGTCCCTGAAACCTGCCTTTTGCATAATGAACCTACGAGTAGCGAAAGCGA AGACGCGAAA--CCAAGTGATC-TA-CCCTTGGGC--------------------A-GG- TTG------AA--GT-----------GGAGGACC-------------------------- -------GAAGTGAAAGGCTAATCAAACTTGGA-GATAGCTCGTACTCCCCGAAAGCCGG TAGAG-CTAAACTCCGAAT---------------------------------------GC TAAAG-GAGAAGAATCCAGACCATCAGCTAAGGTCCCCAATAAGTTA---------GACA GCTAGGATGTTGGCTTGGAAGCAG---CCACATTTAAAGAGTGCGTAACAGCTCACTAGT CGAGGGCGTGGATAAT--AATCGGGCAA-AGTAGGGGAGCATTCCCGTACCGTAAACGGA CACACGTAGC-------------------------------------TCAGGCAA-GGAA CTAGG-------CAAAT-TGACC---C-TGTAACTTCGGGATAAAGCAG----------- ----AGAATAGGTC-CAGGCAACTGTTTA--ACAAAAACACAG-GGCTGTGCAAAATTGA AAGTATAC----AGCCTGACACCTGCCCGGTGCTGGAAGGTTAAGCATT----------- --------GAATTGAAGCCCCAGTAAACGGCGGCCGTAACT------ATAACGGTCCTAA GGTAGCGAAATTCCTTGTCGG--------------------------------GTAAGTT CCGACCTGC----------------------------------------ACGAA------ ------------------------------------TGGTGTAATGACTGTCTCAACACC CGCGATGG------------GACGAAAAGACCCCGTGAA-CCTTTACTATAGCTTAAC-- -----------------------ATTGTGTG---TAGGATAGGCCGGAGA-GACACTGTT TGGTGGGTA--GTTTGAC-TGGGGTG---------------------------------- --------------------------------------GT-CGCCT-C--CAAAAGCGTA ACGGAGGCTTCTAAAGGTG----------------------------------------- ------------------------------------------------------------ ------GAAACTAGAGCATAGTGATCCAAGGGACATCGCTCAA--AGGAT-----AAAAG GTACTCCGGGGATAACA-GGCTGATCCCTCCCAAGAGCTCATATCGACGGAGGGGTTTGG CACCTCGATGTCGGCTCGTCACATCCTGGGG-CT-GGAGAAGGTCCCAAG-GGTTGGGCT GTTCGCCCATTAAAGTGGC---ACGCGAGCTGGGTTCAGAACGTCGTGAGACA-GTTCGG TCTCTATCTATCGTGGG-CGT-ATGAAATTTGCGTGGCTAGTACGAGAGGACCGTATAAG TGCTGAAAGCATCTAAGTACGAA--------------------- [2] 'Pasteur_mu' GUGGCGGACGGGUGAGUAAUGCUUGGG-AAUC-UGGCUUAUGGAG--GGGGAUAACUGUG GGAAACUGCAGCUAAUACCGCGUUGCCAUAAGAUGAGCCCAAGUGGGAUUAGGUAGUUGG UGGGGUAAAGGCCUACCAAGCCUNCGAUCUCUAGCUGGUCUGAGAGGAUGACCAGCCACA CUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCGCAAU GGGGGGAACCCUGACGCAGCCAUGCCGCGUGAAUGAAGAAGCACCGGCUAACUCCG-UGC CAGCAGCCGCGGUAAUAC-GGAGGGUGCGAGCGUUAAUCGGAAUAACUGGGCGUAAAGG- GCACGCAGGCGGU--GAC--------GCU-----CAU--GUGCNAAA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCUG-UAAACGCUGAGCUAACGUG--AUA AACC-------G--CCUGGGGAGUA-CGGC----CGCAAGGUUAAAACUCAAA-UGAAUU GNCG----GGGCCNGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAU-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGUU-GU GAAAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGNGGGGAUGACGU-- -CAAGUCAUCAUGGCCC--------UUACGGGGC-UAC-ACACGUGCUACAAUGGACAGA GG-GAGUCCGGAUUGGAGUCUGCAA---CUCGACUCCAUGAAGU-----------CGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACAC-CAUGGGAGGGG--GGCGUUUACCACGGUAUGAUUCAUGACNNG GGGUAACAAG---GAUCACCUCCUUAGGCGGATGCCTTGGGCGATGAAGGACGTGCGAAA AGCGGATGAGTCGTGTCCG-AATGGGGAAAGAACTGAAA-CATCTAAGTAC-CCCGAGGA AAAGAAA--TCAACC---GATTCTGTGAGT-AGCGGCGAGCGAAGATAAGTAAGAAGGCT AAATACTGACCGATAGTGA-ACGT-ACTGTGAAGG--A-AAGGCG-AAAAGAACCCCAGG GGAGTGAATAGAACCTGAAACCTACCTTTTGTATAATGGGTCAGCGACTAGGGAAACCGA AGACCCGAAA--CCCGGTGATC-TA-GCCATGGGC--------------------A-GG- TTG------AA--GT-----------GGAGGACC-------------------------- -------GAAGTGAAAGGCCAATCAAACCGGGA-GATAGCTGGTTCTCCCCGAAAGCCGG TAGAG-CCAAACTGCGAAT---------------------------------------AC GAGAG-GGAAACAACCCAGACCGCCAGCTAAGGTCCCGAATAAGTGA---------GACA GCTAGGATGTTGGCTTAGAAGCAG---CCACATTTAAAGAAAGCGTAATAGCTCACTAGT CGAGTGCGCGGAAGATGTAACGGGGCTA-AGTAGGGGAGCGTTGCCGTACTGAAAACCGA CACAGGTGGC-------------------------------------TCAGGCAA-GGAA CTAGG-------CAAAA-TAGCA---C-CGTAACTTCGGGAGAAGGAAG----------- ----ATACCAGCTG-GCTGCAACTGTTTA--TTAAAAACACAG-CACTCTGCAAACACGA AAGTATAG----GGTGTGATGCCTGCCCGGTGCTGGAAGGTTAAGCTCC----------- --------TGATCGAAGCCCCAGTAAACGGCGGCCGTAACT------ATAACGGTCCTAA GGTAGCGAAATTCCTTGTCGG--------------------------------GTAAGTT CCGACCTGC----------------------------------------ACGAA------ ------------------------------------TGGCATAATGACTGTCTCCACACC CGCGGCTA------------GACGGAAAGACCCCGTGAA-CCTTTACTATAGCTTGAC-- -----------------------ACTGTGTG---TAGGATAGGTGGGAGCGGACAGTGTC TGGTGGGTA--GTTTGAC-TGGGGCG---------------------------------- --------------------------------------GT-CTCCT-C--CCAAAGCGTA ACGGAGGAGCACGAAGGTC----------------------------------------- ------------------------------------------------------------ ------GAAAGCAGGTCATAGTGATCCAAGGGCCATCGCTCAA--CGGAT-----AAAAG GTACTCCGGGGATAACA-GGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGG CACCTCGATGTCGGCTCATCACATCCTGGGG-CT-GAAGTAGGTCCCAAG-GGTATGGCT GTTCGCCATTTAAAGTGGT---ACGCGAGCTGGGTTTAGAACGTCGTGAGACA-GTTCGG TCCCTATCTGCCGTGGG-CGT-TGGATGATTGATTGGGTAGTACGAGAGGCCCGGATAAG TGCTGAAAGCATCTAAGCACGAA--------------------- [3] 'Gemmata_ob' -CGGCGUAAGGGGCAGUAAGGCAUGGGUA-CC-UACCCGGGGGUU--CGGGAUAGCCAUC AGAGAUGGUGGGUAAUACCGGAUGGCCCCCGGAGGGGCCCAUGUGAUAUUAGCUAGUUGG UGGGGUAACGGCCCACCAAGGCGAAGAUGUCUAGCGGGUGUGAGAGCACGACCCGCGCCA CUCGCACUGAGACACUGGCGAGACACCUACGGGUGGCUGCAGUCGAGGAUCUUCGGCAAU GGGGGCAACCCUGACCGAGCGAUGCCGCGUGCGCGAAUAAGCUCGGGCUAAGUUCG-UGC CAGCAGCCGCGGUAAGAC-GAACCGAGCGAACGUUGUUCGGAAUCACUGGGCUUAAAGG- GCGCGUAGGCGGU--GAC--------GCU-----GAG--GCGCGAAA-GCUAGGGGAGCA AACGGG-AUUAGAUACCCCGGUAGUCC--UAGCCC-UAAACGAUGAGUUAAAAUG--CUA AGCC-------G--CCUGGGGAGUA-UGGU----CGCAAGGCUGAAACUCAAA-GAAAUU GACG----GGGCUCAC-ACAA-GCGGUGGAGCAUGUGGCUUAAUUCGAG-GCUACG--CK AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGUC-GU AA--UGUCGGGUUA-AGUCCCAUAACGAGCGAAA-CCCGAAGAAGGCGGGGAUGACGU-- -CAAGUCCUCAUGGCCU--------UUAUGGGGC-UGC-ACACGUGCUACAAUGGACAGA GU-GAGUUCAGAUCGCAGGCUGCAA---CUCGCCUGCGUGAAGC-----------CGGAA YCGC---------------UAGUAAUCGG----CGGUGAAUGUGUUCCUGAGCCUUGUAC ACACCGCCCGUCAAGC-CACGAAAGUUG--GGACUAAGUCGUAACAAGGUAACCGUAGGG GAACCUGCGGUUGGAUCACCUCCUU-GGGGGATGTCTTGGG--CGAAAGAGCGTGCGAAA AGTGGGGGAGCTGTACCCG-----------GAACTGAAA-CATCTCAGTAC-CTGTAGGA GGAGAAA--GAAACC---GATTCCGTCAGT-AGCTGCGAGCGAACCTGAGTAGGAAGGCT AAATACTGACCGATAGCGT-AGGT-AGCGCGAGCG--A-C-GATG-GGAAGAACCCCAGG GGAG-GAACTGAACCTGAAACCTGCCTTTTGCATAATGATCCGGCGACTAGCGAAAGCGA AGACGCGAAA--CCACGTGACC-TA-CGCATGGCC--------------------A-GG- ATG------AA--GT-----------GGAGGACC-------------------------- -------GAAGTGAAAGTCTAATCAAACGTGGA-GATAGCTCGTTCTCTCCGAAAGCGGG TAGAG-CCAAACTCCGAAT---------------------------------------AC GAGAG-GGGAACAGCCCAGATCGCCCGCTAAGGTCCCAGATCAGTGA---------GACA GCCAGGATGTTGGCTTAGAAGCAG---CCACATTTAAACAACGCGTAATAGCGGACTGGT CGAGTGCGCCGATAATG-AACGGGACTA-A-TAGGAGAGCGT--CCGTACTA-AAACCGA CACAGGTAGC-------------------------------------TAAGGCAA-GGAA CTCTG-------CAAGT-TAAAC---C-CGTAACTTCGGGAAAAGGCAG----------- ----TGAAAAGGTT-CTGGCGACTGTTTA--CTAAAAACACAG-GTCTGTGCGAAGGCGT AAGTATAC----AGACTGACGCCTGCCCGGTGCTGGTAAGTTAAGCTCG----------- --------CAACCGAAGCTCCAGTAAACGGCGGCCGTAACT------ATGACGGTCCTAA GGTAGCGAAGTTCCTTGTCGG--------------------------------GTAAGTT CCGACCTGC----------------------------------------ATGAA------ ------------------------------------TGGCGTAACGACTGTCTCCACACC CGCAGCTA------------GACGGAAAGACCCCGTGAA-CCTTAACTGCAGCTTGGT-- -----------------------ATTGTGCG---TAGCGTAGGTGGGAGG-GACCGTGCT AAGTGGGCA--GTTTGAT-TGGGGCG---------------------------------- --------------------------------------AT-CTCCT-C--CTAAACGGTA ACGGAGGAGTGCAACGGTC----------------------------------------- ------------------------------------------------------------ ------GAAAGTCGGCCTTAGTGATCCAAGGGCCATCGCTCAA--CAGAT-----AAAAG GTACTCCGGGGATAACA-GGCTTATCTCCTCTGAGCGTTCATAGCGGCGAGGAGGTTTGG CACCTCGATGTCGGCTCATCACATCCTGGGG-GT-GGAGAAGCTCCCAAG-GGTTCGGCT GTTCGCCGATGAAAGTGGT---ACGTGAGCTGGGTTTAGACCGTCGTGAGACA-GGTCGG TCCCTATCTGCTGTGGG-CGG-AGGATACTTGCGGGGCTAGTACGAGAGGACTGGATAAA CGCTGAAGGCATATAAGCGTGAA--------------------- [4] 'Plancto_br' GCGGCAAACGGGGUAGUAAGGCGUCGAUA-UG-AACCCUCAGGUC--UGGAAUAGCCAUU GGAAACGAUGGGUAAUGCCGGAUCGCCUGAGGACCGGUCGACGUGAUACUAGGUAGUUGG UGAGGUAAUGGCUCACCAAGCCUACGAUGUCUAGGGGGUGUGAGAGCAUGGCCCCCACCA CUGGGACUGAGACACUGCCCAGACACCUACGGGUGGCUGCAGUCGAGAAUCUUUGGCAAU GGGCGAAAGCCUGACCAAGCGAUGCCGCGUGCGGGAGGAAGCACGGGCUAAGUACG-UGC CAGCAGCCGCGGUAACAC-GUACUGUGCGAACGUUAUUCGGAAUCACUGGGCUUAAAGG- GUGCGUAGGCGGU--GAC--------GCU-----GAG--GCACGAAA-GCCAGGGGAGCG AACGGG-AUUAGAUACCCCGGUAGUCC--UGGCUG-UAAACGUUGAGCAAAAGUG--UUA AGCC-------G--CCUGGGGAGUA-UGGU----CGCAAGGCUGAAACUCAAA-GGAAUU GACG----GGGCUCAC-ACAA-GCGGUGGAGCAUGUGGCUUAAUUCGAG-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGCC-GU GAGGUGUUGGGUUA-AGUCCUUGAACGAGCGCAA-CCCGAGGAAGGUGGGGACGACGU-- -CAAGUCAUCAUGGCCU--------UUAUGGGGC-UGC-ACACGUGCUACAAUGCACAAA GG-GAGUUCGGAUUGUAGGCUGCAA---CUCGCCUACAUGAAGC-----------UGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUGUGUUCCUGAGCCUUGUAC ACACCGCCCGUCAAGC-CACGAAAGUUG--GGACUAAGUCGUAACAAGGUAGCCGUAGGG GAACCUGC------------------GGTGGATGCCTAGG----GAAAGAGCGTGCGAAA AGCGGGGGAGCCGTACTCT-----------GAACTGAAA-CATCTAAGTAC-CCACAGGA AAGGAAA--GAAAT----GACTCCCTGAGT-AGCGGCGAGCGAACATAATTAGGAAGGCT AAGTACTGACCGATAGTGC-ACGT-AGCGTGAGTG--A-AAGGTG-AAAAGAACCCCAGG GGAG-GGAAAGAACCTGAAACCTGCCTTTTGCATAATGACCCAACGAGTAGGGAAACCGA AGACGCGAAA--CCGTGTGATC-TA-CCCATGGGC--------------------A-GG- TTG------AA--GT-----------GGAGGACC-------------------------- -------GAAGTAAAAGTCTAATCAAACCAGGA-GATAGCTCGTTCTCTTCGAAAGCCGG TAGAG-ACAAACTCCGAAT---------------------------------------AC GAGAG-GGAAACAACCCAGATCGCCTGCTAAGGTCCCCAATGAGTCT---------GACA GTCGGGATGTTGGCTTAGAAGCAG---CCACATTTAAAAAGTGCGTAATAGCTTACCGAT CGAGTGCACCGATAATG-ACCGGGAGTA-A-TAGAAGAGCGT--CCGTACTA-AAACTGA CACAGGTAGC-------------------------------------TAAGGCAA-GGAA CTCTG-------CAAAA-TGGCC---C-CGTAACTTTGGGATAAGGCAG----------- ----TAAATTGGCT-CTGGCGACTGTTTA--CTAAAAACACAG-GACTCTGCGAACTCGC AAGTATAG----AGTCTGACGCCTGCTCGGTGCCGGTAAGTTAAGCTCA----------- --------CAACCGAAGCTCCGGTAAACGGCGGCCGTAACT------ATGACGGTCCTAA GGTAGCGAAATTCCTTGTCGG--------------------------------GTAAGTT CCGACCTGC----------------------------------------ATGAA------ ------------------------------------TGGCGTAACGACTGTCTCAACACC CGCAGCAA------------GACGGAAAGACCCCATGAA-CCTTTACTGTAGGCTGAT-- -----------------------ATTGTGTG---TAGGATAGGTGGGAGAGGACAGTGTC AGTTGGGCA--GTTTGAC-TGGGGCG---------------------------------- --------------------------------------GT-CTCCT-C--CCAAAGAGTA ACGGAGGAGCCCAATGGTC----------------------------------------- ------------------------------------------------------------ ------GAAAGTCGGGCTTAGTGATCCAAGGGCCGTCGCTCAA--CAGAT-----AAAAG GTACTCTGGGGATAACA-GGCTGATCCCCTCCGAGCGTCCATAGCGGCGAGGGGGTTTGG CACCTCGATGTCGGCTCATCACATCCTGGGG-CT-GAAGAAGGTCCCAAG-GGTTCGGCT GTTCGCCGATTAAAGTGGT---ACGTGAGCTGGGTTTAAACCGTCGTGAGACA-GGTTGG TCCCTATCTGCTGTGGG-CGT-ACGAGACTTGAGAGGTTAGTACGAGAGGATTTAATAAG CGCTGAAAGCATCTAAGCGCGAA--------------------- [5] 'Thermoa_te' -CGGCGGACGGGUGAGUAACGCGUGAGCAACC-UACCCUUGAGAC--AGGGAUAACCCUG GGAAACCGGGGCUAAUACCUGAUCGCUCAAGGAUGGGCUCGCGUCCCAUCAGCUAGUUGG UGAGGUAACGGCUCACCAAGGCUACGACGGGUAGCCGGCCUGAGAGGGUGGUCGGCCACA CUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUCUUCCGCAAU GGGCGAAAGCCUGACGGAGCGACGCCGCGUGAGCGCGAAAGCCCCGGCUAACUACG-UGC CAGCAGCCGCGGUAAGAC-GUAGGGGGCGAGCGUUGUCCGGAGUUACUGGGCGUAAAGG- GCGCGUAGGCGGU--GAC--------GCU-----GAG--GCGCGAGA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCUG-UAAACGAUGAGGAAACCCA--AUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGCUGAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAA-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGGUGCAUGGUUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAAUCAUCAUGCCCU--------AUAUGGGGC-CAC-ACACGUGCUACAAUGGACAGA GG-GAGUUCGGAUUGCAGGCUGCAA---CUCGCCUGCAUGAAGG-----------CGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUGCGUUCCCGGGCCUUGUAC ACACCGCCCGUCACAC-CACGAGAGUUG--GGGUGAAGUCGUAACAAGGUAGCCGUACGG GAACGUGCGGCUGGAUCACCUCCUU-CAAGCAGGCAGAGATTCCGAATGGGGGAAGGGTA ATACAAGCATCCG-----------------GAACTGAAA-CATCTAAGTAG-CCCGAGGA AAAGAAA--GCAAAA---GATTCCCTAAGT-AGCGGCGAGCGAACCAGAGTACCAAGGCT AAATACTGACCGATAGCGC-ATGT-ACCGTGAGGG--A-AAGGTG-AAAAGAACCCCGGG GAGT-GAATAGAACCTGAAACCTACTTTTTGCAGAACGGGCCGGCGAGTAGCGAAAGCGA AGACCCGAAA--CCGTGCGACC-TA-CCCATGGCC--------------------A-GG- GTG------AA--GT-----------GGAGGCCC-------------------------- -------GAAGTGAAATGCCAATCGAGCACGGA-GATAGCTGGTTCTCCCCGAAAGCCGG TAGAG-CCAAACTCCGAAT---------------------------------------GC GAGAG-GGGAACAGCCCAGACCTCCAGCTAAGGTCCCGAATAAGTGA---------GACA ACCGGGATGTTGGCTTAGAAGCAG---CCACATTTAAAGAGTGCGTAACAGCTCACCGGT CGAGTGCGCCGAAAATG-AACGGGGCTA-AGTAGGGGAGCGTACCCGTACCGCAAACCGA CACAGGTAGC-------------------------------------ACAGGCAA-GGAA CTCGG-------CAAAA-TGACT---C-CGTAACTTCGGGAGAAGGCAG----------- ----AGAAGAGGCC-CAAGCGACTGTTTA--CCAAAAACACAG-GTCTCTGCTAAGCCGA AAGTATAG----GGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGCTCT----------- --------GAACCGAAGCCCCAGTGAACGGCGGCCGTAACT------ATAACGGTCCTAA GGTAGCGAAATTCCTTGTCGG--------------------------------GTAAGTT CCGACCTGC----------------------------------------ACGAA------ ------------------------------------AGGCGTAACGACTGTCTCGAGACC CGCGATTG------------GACGGAAAGACCCCGTGGA-GCTTTACTGTAGCCTGTC-- -----------------------ACTGTGTA---CAGGATAGGTGGGAGAGGACAATGGC AGGTGGGCA--GTTTGAC-TGGGGCG---------------------------------- --------------------------------------GT-CGCCT-C--CTAAAAGGTA ACGGAGGCGCCCAAAGGTC----------------------------------------- ------------------------------------------------------------ ------GAAAGTCGGGCTTAGTGATCCGAACGCCGTCGCTCAA--CGGAT-----AAAAG CTACCCCGGGGATAACA-GGCTGATCTCCCCCAAGAGTCCACATCGACGGGGAGGTTTGG CACCTCGATGTCGGCTCATCGCATCCTGGGG-CT-GAAGTAGGTCCCAAG-GGTTGGGCT GTTCGCCCATTAAAGCGGT---ACGTGAGCTGGGTTCAGAACGTCGTGAGACA-GTTCGG TCCCTATCCGTCGCGGG-CGC-AGGAGACTTGAGGGGATAGTACGAGAGGACCGGATAAA CGCTGAAAGCATCTAAGCGTGAA--------------------- [6] 'Sulfolo_ac' GUGGCGGACGGCUGAGUAACACGUGGCUAACC-UACCCUCGGGAC--GGGGAUAACCCCG GGAAACUGGGGAUAAUCCCCGAUCGCCCGAGGAUGGGGCUACGGCCCAUCAGGCUGUCGG UGGGGUAAAGGCCCACCGAACCUAUAACGGGUAGGGGCCGUGGAAGCGGGAGCCUCCAGU UGGGCACUGAGACAAGGGCCCAGGCCCUACGGGGCGCACCAGGCGCGAAACGUCCCCAAU GCGCGAAAGCGUGAGGGCGCUACCCCGAGUGCCUCAAUAAGCGGGGGGCAAGUCUGGUGU CAGCCGCCGCGGUAAUAC-CAGCUCCGCGAGUGGUCGGGGUGAUUACUGGGCCUAAAGC- GCCUGUAGCCGGC--GAC--------GGU-----GAG--AGGCGAAA-GCCGGGGCAGCA AACGGG-AUUAGAUACCCCGGUAGUCC--CGGCUG-UAAACGAUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGU----CGCAAGACUGAAACUUAAA-GGAAUU GGCG----GGGAGCACCACAA-GGGGUGGAACCUGCGGCUCAAUUGGAG-UCAACG--CC UGGAAUCU--ACGA---------------------------------------------- --------GACC-----AGA------GGAGGUGCAUGGCCGUCGCCAGC-UCGUGUU-GU GAAAUGUCCGGUUA-AGUCCGGCAACGAGCGAGA-CCCGAGGAAGGAGGGGGCCACGG-- -CAGGUCAGCAUGCCCC--------GAAACGGGC-CGC-ACGCGGGUUACAAUGGACAAC GG-GAGUUGGGAUCGAGGGCUGAAA---CCCGCCCUCGUGAACG-----------AGGAA UCCC---------------UAGUAACCGG----CGGUGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCGCUC-CACCCGAGGGG--GGGAGAAGUCGUAACAAGGUAGCCGUAGGG GAACCUGCGGCUGGAUCACCUCAGAGGGUGGAUGGCUCGGCCGAAGAAGGGCGCGCGAAA UGCGGGUGAGGCGUCCCCU-AAUGGGAUAUGAACGGAAA-CAUCUUAGUAG-GGGGAGGA AAAGAAA--UCAAUU---GAUCCCCUGAGU-AGGGGCGACCGAAGUAGAGUACCAAGGCU AAAUAUGGACCGAUAGCAA-ACGU-ACCGUGAGGG--A-AAGCUG-AAAAGAACCCCGGG GGAGUGCAAAGAGCCUGAAACCUUCGUCUUGAAACACGGGCCGGGGAGUAGGGAAACCAA AGGCUAGAAA--CCGGGCGAUC-UA-GUCCGGGGC--------------------A-GG- CUG------AA--GU-----------GGAGGGCC-------------------------- -------GAAGCAAAAGACCAAUCUAGCCCGGU-GAUAGCUAGUUCCCCCCGAAAGCCGG UAGAG-UCUAACUCCGAAC---------------------------------------CC AAAAG-GGGAACAACCCAGACCUG-GGUUAAGGCCCCAAAUAAGUGA---------GACA GCGGGAAGGUGGGCCCAGCAGCAG---CCACCUCUAAGGAGUGCGUAACAGCUCACCCGC CGAGGGCCCUAAAGAUUGGUCGGGGCUA-AGUAGGGGGGCGCUGCCGUACCUAGAACCGA CACUGGUGCC-------------------------------------CAAGGCAG-GGAA CUCGG-------CAAAU-UAACC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGACCAGAGG-GACCUGACUGUUUA--AUAAAAACAUAG-GUCCCCGCUAGCCCGA AAGUACGG----GGGCUAAAUCCUGGCCACUGGUGGUUGGUUAA-CAAC----------- --------CGGGCGAAGCCCCACCGAAGGCCGGGGGUAACU------CUGACCCUCUUAA GGUAGCCAAAUGCCUUGCCGG--------------------------------GUAAGUU CCGGCGCGC----------------------------------------AUGAA------ ------------------------------------UGGAUCAACGCCUGUCCCAGCUCU CCCUACAC------------CGAGAGAAGACCCCGUGGA-GCUUCACCGCAGCCUGGC-- -----------------------GUUGUGCG---UAGAGUAGGUGGGAGGGAACAACGUC AGGUGGGCG--GUUCGGC-UGGGGCG---------------------------------- --------------------------------------GCACUCCC-G--CGAAAAGAUA ACACGGGAGCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCGGGGCCUAGCGAACGCGUGGGGGCCGGGCAU--GACAG-----AAAAG UUACCCCGGGGAUAACA-GGGUCGUCGCGGGCGAGAGCUCACAUCGACCCCGCGGUUUGC UACAUCGAUGUCGGCUCUUCCCACCCUGGAG-GU-GCAGCUGCCUCCAAG-GGUAGGGCU GCCCGCCCGUUAAAGGGGA---GCGUGAGCUGGGUUUAGACCGUCGCGAGACA-GGUCGG ACUCUAAGGGUAGGGAGCUGC-GGACCGCUUGAGGGGAUAGUACGAGAGGAACAG-UAAC CGCUGAAAGCAUCUAAGCGGGAA--------------------- [7] 'Sulfolo_so' GUGGCGGACGGCUGAGUAACACGUGGCUAACC-UACCCUGAGGAG--GGAGAUAACCCCG GGAAACUGGGGAUAAUCUCCCAUCGCCUCAGGAUGGGGCUGCGGCCCAUCAGGUAGUUGG GGGGGUAAGGGCCCCCCAAGCCUAUAACGGGUAGGGGCCGUGAGAGCGGGAGCCCCCAGU UGGGCACUGAGACAAGGGCCCAGGCC-UACGGGGCGCACCAGGCGCGAAACGUCCCCAAU GCGCGGAAGCGUGAGGGCGCCACCCCGAGUGCUCCAAUAAGCGGGGGGCAAGUCUGGUGU CAGCCGCCGCGGUAAUAC-CAGCCCCGCGAGUGGUCGGGACUCUUACUGGGCCUAAAGC- GCCCGUAGCCGGC--GAC--------GGU-----GAG--GGGCGAAA-GCCGGGGCAGCA AAAGGG-AUUAGAUACCCCUGUAGUCC--CGGCUG-UAAACAAUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGU----CGCAAGACUGAAACUUAAA-GGAAUU GGCG----GGGAGCACCACAA-GGGGUGGAACCUGCGGCUCAAUUGGAG-UCAACG--CC UGGAAUCU--ACGA---------------------------------------------- --------GACC-----AGA------GGAGGUGCAUGGCCGUCGCCAGC-UCGUGUU-GU GAAAUGUCCUGUUA-AGUCAGGCAACGAGCGAGA-CCCGAGGAGGGAGGGGGCCACGG-- -CAGGUCAGCAUGCCCC--------GAAACGGGC-CGC-ACGCGGGUUACAAUGGACAGC GG-GAGUUGGGAUCGAGGGCUGAAA---CUCGCCCUCGUGAACG-----------AGGAA UCCC---------------UAGUAACCGG----CGGUGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCGCUC-CACCCGAGGGG--GGGAG------------------------- --------------------------GGUGGAUGGCUCGGCCGAAGAAGGGCGCGCGAAA UGCGGGUGAGGCGUCCCCU-AAUGGGAUAUGAACGGAAA-CAUCUUAGUAG-GGGGAGGA AAAGAAA--UCAAUU---GAUCCCCUGAGU-AGGGGCGACCGAAGUAGAGUACCAAGGCU AAAUAUGGACCGAUAGCAA-ACGU-ACCGUGAGGG--A-AAGCUG-AAAAGAACCCCGGG GGAGUGCAAAGAGCCUGAAACCUUCGUCUUGAAACACGGGCCGGGGAGUAGGGAAACCAA AGGCUAGAAA--CCGGGCGAUC-UA-GUCCGGGGC--------------------A-GG- CUG------AA--GU-----------GGAGGGCC-------------------------- -------GAAGCAAAAGACCAAUCUAGCCCGGU-GAUAGCUAGUUCCCCCCGAAAGCCGG UAGAG-UCUAACUCCGAAC---------------------------------------CC AAAAG-GGGAACAACCCAGACCUG-GGUUAAGGCCCCAAAUAAGUGA---------GACA GCGGGAAGGUGGGCCCAGCAGCAG---CCACCUCUAAGGAGUGCGUAACAGCUCACCCGC CGAGGGCCCUAAAGAUUGGUCGGGGCUA-AGUAGGGGGGCGCUGCCGUACCUAGAACCGA CACUGGUGCC-------------------------------------CAAGGCAG-GGAA CUCGG-------CAAAU-UAGCC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGACCAGAGG-GACCUGACUGUUUA--AUAAAAACAUAG-GUCCCCGCUAGCCCGA AAGUACGG----GGGCUAAAUCCUGGCCACUGGUGGUUGGUUAA-CAAC----------- --------CGGGCGAAGCCCCACCGAAGGCCGGGGGUAACU------CUGACCCUCUUAA GGUAGCCAAAUGCCUUGCCGG--------------------------------GUAAGUU CCGGCGCGC----------------------------------------AUGAA------ ------------------------------------UGGAUCAACGCCUGUCCCAGCUCU CCCUACAC------------CGAGAGAAGACCCCGUGGA-GCUUCACCGCAGCCUGGC-- -----------------------GUUGUGCG---UAGAGUAGGUGGGAGGGAACAACGUC AGGUGGGCG--GUUCGGC-UGGGGCG---------------------------------- --------------------------------------GCACUCCC-G--CGAAAAGAUA ACACGGGAGCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCGGGGCCUAGCGAACGCGUGGGGGCCGGGCAU--GACAG-----AAAAG UUACCCCGGGGAUAACA-GGGUCGUCGCGGGCGAGAGCUCACAUCGACCCCGCGGUUUGC UACAUCGAUGUCGGCUCUUCCCACCCUGGAG-GU-GCAGCUGCCUCCAAG-GGUAGGGCU GCCCGCCCGUUAAAGGGGA---GCGUGAGCUGGGUUUAGACCGUCGCGAGACA-GGUCGG ACUCUAAGGGUAGGGAG-UGC-GGACCGCUUGAGGGGAUAGUACGAGAGGAACAG-UAAC CGCUGAAAGCAUCUAAGCGGGAA--------------------- [8] 'Acidian_in' GUGGCGGACGGCUGAGUAACACGUGGCUAACC-UACCCUCGGGAC--CCGGAUAACUCCG GGAAACUGGAGCUAAUCCGGGGCCGCCCGAGGAUGGGGCUGCGGCCCAUCAGGCUGUUGG CGGGGUAACGGCCCGCCAAACCGAUAACGGGUAGGGGCCGUGAGAGCGGGAGCCCCCAGU UGGGCACUGAGACAAGGGCCCAGGCC-UACGGGGCGCACCAGGCGCGAAACGUCCCCAAU GCGGGAAACCGUGAGGGCGCUACCCCCAGUGCUCCAAUAAGCGGGGGGCAAGACUGGUGU CAGCCGCCGCGGUAAUAC-CAGCCCCGCGAGUGGUCGGGACGCUUACUGGGCUUAAAGC- GCCCGUAGCCGGC--GAC--------GGU-----GAG--GGGCGAAA-GCCGGGGUAGCA AAAGGG-AUUAGAUACCCCUGUAGUCC--CGGCUG-UAAACGAUGAGGGAAACCG--GUA AGCC-------G--CCUGGGGAGUA-CGCC----CGCAAGGGUGAAACUUAAA-GGAAUU GGCG----GGGAGCACCACAA-GGGGUGGAACCUGCGGCUCAAUUGGAG-UCAACG--CC UGGAAUCU--ACGA---------------------------------------------- --------GACC-----AGA------GGAGGUGCAUGGCCGUCGCCAGC-UCGUGUU-GU GAAAUGUCCGGUUA-AGUCCGGCAACGAGCGAGA-CCCGAGGAAGGAGGGGGCCACGG-- -CAGGUCAGCAUGCCCC--------GAAACGGGC-CGC-ACGCGGGUUACAAUGGACAGC GG-GAGUUGGGAUCGAGGGCUGAAA---CUCGCCCUCGUGAACG-----------AGGAA UCCC---------------UAGUAACCGG----CGGUGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCGCUC-CACCCGAGGGG--GGGCG------------------------- --------------------------GGUGGAUGGCUCGGCCGANGAAGGGCGCGCGAAA UGCGGGGUAGGCGUCCCCCGAAUGGGACCUGAACGGAAG-CAUCUUAGUAG-GGGGAGGA GGAGAAA--UCAACU---GAUCCCCCGAGU-AGGCGCGACCGAAGCAGAGUACCAUGGCU AAAUACGGACCGAUAGCGA-ACGU-ACCGUGAGGG--A-A-GCUG-AAAAGCACCCCGGG GG-GUGAAAAGUGCCUGAAACCUUCGUCUUGAAACACGGGCCGGGGAGUAGGGAAACCGA AGGCUAGAAA--CCGGGCGAUC-UA-GACCGGGGC--------------------A-GG- CCG------AA--GU-----------GGAGGGCC-------------------------- -------GAAGUAAAAGGCCAAUCUAGCCCGGU-GAUAGCUAGUUCCCCCCGAAAGCCGG UAGAG-UCAAACUCCGAAC---------------------------------------CU AAGAG-GGGAACAACCCAGACCUG-GGUUAAGGUCCCUAAUAAGUGA---------GACA GCGGGGAGGUGGGCCCAGCAGCAG---CCACCUCUAAGGAGUGCGUAACAGCUCACCCGC CGAGGGCCCUGAAGACUGGUCGGGGCUA-AGUAGGGGGGCGUCGCCGUACCUAGAACCGA CACAGGUGCC-------------------------------------CAAGGCAG-GGAA CUCGG-------CAAAU-UGGCC---C-CGUACCUUCGGAAGAAGGCAG----------- ----UGACCAGGGG-GGCCUGACUGUUUA--AUAAAAACAUAG-GUCCCCGCUAGCCCGU AAGAACGG----GGGCUGAAUCCUGGCCACUGGCGGUCGGUGAA-CAAC----------- --------CGGGCGAAGCCCCGCUGAAGGCCGGGGGUAACU------CUGACCCUCUCAA GGUAGCCAAAUGCCUUGCCGG--------------------------------GCAAGUU CCGGCGUGC----------------------------------------AUGAA------ ------------------------------------UGGAUCAACUGCUGUCCCAGCACC CCCUACAC------------CGAGAGAAGACCCCGUGGA-GCUUCACUGCAGCCUGGC-- -----------------------GUUGUGCG---UAGAGUAGGUGGGAGGGGACAGCGUC AGGUGGGCA--GUUCGGC-UGGGGCG---------------------------------- --------------------------------------GCACUCCC-G--CGAAAAGAUA ACACGGGAGCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCGCGGCCUAGCGAACGCAUGGGGGCUGGGCAU--GUCAG-----AAAAG UUACCCCGGGGAUAACA-GGGUCGUCGCGGGCGAGAGCUCCCAUCGACCCCGCGGUUUGC UUCAUCGAUGUCGGCUCUUCCCACCCAGGGG-GU-GCAGCAGCCCCCAAG-GGUAGGGCU GCCCGCCCGUUAAAGGGGA---ACGUGAGCUGGGUUUAGACCGUCGCGAGACA-GGUCGG ACUCUAAGGGUAGGGGG-UGC-AGGCCGCCUGAGGGGAUAGUACGAGAGGAACAG-UAAU CGCUGAAAGCAUCUAAGCGAGAA--------------------- [9] 'Thermof_pe' CCGGCGGACGGCUCAGUAGCACGUGGCUAACC-UACCCUCGGGAG--GGGGAUAACCCCG GGAAACUGGGGAUAAACCCCCAUCGCCCGAGGAUGGGGCUGCGCCCUAUCAGGUAGUUGG CGGGGUAACGGCCCGCCAAGCCGAUAACGGGUGGGGGCCGUGAGAGCGGGAGCCCCGAGA UGGGCACUGAGACAAGGGCCCAGGCCCUACGGGGUGCACCAGGGGCGAAACUUCCGCAAU GCGGGAAACCGUGACGGAGUCACCCCGAGUGCCACAAUAAGCGGGGGGCAAGCUUGGUGU CAGCCGCCGCGGUAAUAC-CAACCCCGCGAGUGGUCGGGACGUUUAUUGGGCCUAAAGC- GUCCGUAGCCGGC--GAC--------GGU-----GAG--GGACGAAA-GCUGGGGGAGCA AAGGGG-AUUAGAUACCCCCGUAGUCC--CAGCUG-UAAACGAUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGCUGAAACUUAAA-GGAAUU GGCG----GGGAGCACCACAA-GGGGUGAAGCUUGCGGUUUAAUUGGAG-UCAACG--CC GGAAACCU--ACGC---------------------------------------------- --------GACA-----AGA------GGAGGUGCAUGGCCGUCGCCGGC-UCGUGCC-GU GAGGUGUCCUGUUA-AGUCAGGGAACGAGCGAGA-CCCGAGGAAGGUGGGGGCUACGG-- -CAGGUCAGUAUGCCCC--------GAAACGGGC-UAC-ACGCGAGCUGCAAUGGACAGC GG-GAGUAGGAAUCGAGGGCUGCAA---CUCGCCCUCGUGAACG-----------UGGAA UCCC---------------UAGUAACCGG----CGGUGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCGCUC-CACCCGAGGGG--GGGAGAAGUCGUAACAAGGUGGCCGUAGGG GAACCUGCGGCCG-------------GGUGGAUGGCUCGGCCGAGGAAGGCCGUGCGAUA CGCCGGGGAGCCGUCGCCG-AAUGGGACCUCAACGGAAA-CAUCUUAGUAG-GGGGAGGA GAAGAAA--CCAAUU---GAUCCCCUGAGU-AGGG-CGACCGAACCUGAGUACCAAGGCU AAAUACGGACCGAUAGCGA-ACGU-ACCGUGAGGG--A-AAGCUG-AAAAGCACCCCGGG GG-GUGAAAAGAGCCUGAAACCUACGUCUAGAAACACGGGCCGGGGAGUAGGGAAACCGA AGACCAGAAA--CCGAGCGAUC-UA-GGCCGGGGC--------------------A-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------GAAGCAAAAGACCAAUCAAGCUCGGU-GAUAGCUGGUUCCCCCCGAAGGCCGG UAGGG-CCAAACCCCGAAC---------------------------------------CG GAGAG-GGGAACAACCCAGACCGG-GGUUAAGGCCCCCAAUAAAGUA---------GACA GCGGGGCCGUAGGCUUAGAAGCAG---CCACGGCUAAGAAGUGCGUAACAGCUUACCCGC CGAGGGCCCCGAAGAU-UACCGGGACUA-AGUAGGGGGGCGUCCCCGUACCGAGAACCGA CACAGGUGCC-------------------------------------CAAGGCAG-GGAA CUCGG-------CAAAU-UAGCC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGACAAGGGG-GACCCGACUGUUUA--AUAAAAACAUAG-GUCCCCGCGAGCCCGA AAGUACGG----GGGCUGAAUCCUGGCCACUGGCGGUACGUGAA-CAAC----------- --------CGGGCGAAGCGCCGCCGAAGGCCGGGAGUAACU------CUGACUCUCUUAA GGUAGCCAAAUGCCUUGCCGG--------------------------------GUAAGUU CCGGCGCGC----------------------------------------AUGAA------ ------------------------------------UGGAUCAACGACUGUCCCAGCAGU CCCGGUGG------------GGCGAGAAGACCCCGUGGA-GCUUCACAGCAGCCUGGC-- -----------------------GUUGUGCG---UAGCGUAGGCGGGAGCGGACAGCGCC AGGUGGGCU--GUUCGGC-UGGGGCG---------------------------------- --------------------------------------GCACACCC-C--UGAGAAGGUA UCAGGGGUGCCCAAAGCUG----------------------------------------- ------------------------------------------------------------ ------GAAACCGGGGCCUAGCGAACGGGUGGGGGCCGGGCAU--GACAG-----AAAAG UUACCCCGGGAGUAACC-GGCUCGUCGCGGGCGAGAGUUCACAUCGACCCCGCGGUUUGG UACCCAGACGUCGUCUCUUCCUAGCUUGGCC-CU-GCAGCAGGGGCCAAG-AGUGGGGCU GCUCGCCCAUUAAAAGGGA---ACGUGAGAUGGGUUUAGACCGUCGCGAGACA-GGUCGG ACUCUACCUGCCGGGAC-CGU-UGGCCGCCUGAGGGGACAGUACGAGAGGAACUG-UAAC CGCUGAAGGCAUCUAAGCGGGAA--------------------- [10] 'Aeropyr_pe' GUGGCGGACGGCUGAGUAACACGUGGCUAACC-UACCCUCGGGAC--GGGGAUAACCCCG GGAAACUGGGGCUAAUCCCCGAUCGCCCGAGGAUGGGGCUGCGGCCCAUCAGGUAGUUGG CGGGGUAAUGGCCCGCCAAGCCUACGACGGGUAGGGGCCGUGAGAGCGGGAGCCCCCAGA UGGGCACUGAGACAAGGGCCCAGGCCCUACGGGGCGCACCAGGCGCGAAAACUCCGCAAU GCGGGCAACCGUGACGGGGCUACCCCGAGUGCCCCAAUAAGCGGGGGGCAAGACUGGUGU CAGCCGCCGCGGUAAUAC-CAGCCCCGCGAGCGGUCGGGGUGCUUACUGGGCCUAAAGC- G-CCGUAGCCGGC--GAC--------GGU-----GAG--GGGCGAAA-GCCGGGGGAGCG AACCGG-AUUAGAUACCCGGGUAGUCC--CGGCUG-UAAACGAUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGCUGAAACUUAAA-GGAAUU GGCG----GGGAGCACCACAA-GGGGUGGAGCCUGCCGCUUAAUUGGAG-UCAACG--CC GGGAACUCUCACGC---------------------------------------------- --------GACA-----AGG------GGAGAUGCAUGGCCGUCGCCAGC-UCGUGCC-GU GAGGUGUCCUGUUA-AGUCAGGCAACGAGCGAGA-CCCGAGGAAGGAGGGGGCAACGG-- -CAGGUCAGCAUGCCCC--------UAAACGGGC-UGC-ACGCGGGCUACAAUGGACAGC GG-GAGUUGGGAUCGANGGCUGCAA---CUCGCCCUCGUGAACG-----------UGGAA UCCC---------------UAGUAACCGG----CGGUGAAUACGUCCCUGCUCCUUGCAC ACACUGCCCGUCGCUC-CCCCCGAGCGCCCGGGGGAUGGCUCGGCUCGGGCGCCGAGGAA GGGC------------------------------------------------GUGCGAUA AGCGGGGUAGGCGUCCCCG-AAUGGGACUUGAAAGGAAG-CAUCUGAGUAG-GGGGAGGA GAAGAAA--CCAACA---GAUCCCCUGAGU-AGGGGCGACCGAAGCAGAGUACCAAGGCU AAAUACGGACCGAUAGCGA-ACGU-ACCGUGAGGG--A-AAGCUG-AAAAGAACCCCGGG GG-GUGAAAAGAGCCUGAAACCUCCGUCUUGAAACACGGGCCGGGGAGUAGGGAAACCGA AGACCAGAAA--CCGGGCGAUC-UA-GGCGGGGGC--------------------A-GG- GCG------AA--GU-----------GGAGGCCC-------------------------- -------GCAGUGAAAGGCCAAUCUAGCCCGGAAGAUAGCUGGUUCCCGCCGAAGGCCGG UAGAG-CCAAACUCCGAAC---------------------------------------CU GAGAG-GGGAACAACCCAGACCGG-GGUUAAGGCCCCUAAUAAGUGA---------GACA GCGGGGAGGUGGGCCUAACAGCAG---CCACCUCUAAGGAGUGCGUAACAGCUCACCCGC CGAGGGCCCCGAAGAUUGGUCGGGGCUA-AGUAGGCGGGCGUCGCCGUACCGAGAACCGA CACAGGUGCC-------------------------------------CAAGGCAG-GGAA CUCGG-------CAAAU-UGGCC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGCCUAGGGG-GGCCUGACUGUUUA--ACAAAAACAUAG-CUCCCCGCUAGCCCGA AAGUACGG----GGGGUGAGCCCUGGCCACUGGCGGUCCGUGAA-CAAC----------- --------CCGGCGAAGCGCCGCUGAAGGCCGGGAGUAACC------CUGACUCUCUUAA GGUAGCCAAAUGCCUUGCCGG--------------------------------GUAAGUU CCGGCGCGC----------------------------------------AUGAA------ ------------------------------------CGGGUCAACGACUGUCCUGGCUCC CCCCGCAG------------GGAGAGAAGACCCCGUGGA-GCUUUACCGCAGCCCGGC-- -----------------------GUUGUGCG---UAGCGUAGGUGGGAGCGGACAGCGUC GGGUGGGCG--GUUUGGC-UGGGGCG---------------------------------- --------------------------------------GCACGCCC-G--CGAAAGGGUA ACACGGGCGCCCAAAGGUG----------------------------------------- ------------------------------------------------------------ ------GAAACCGUGGCCUAGCGCACGGGUGGGGGCCGGGCAC--GACAG-----AAAAG UUACCCCGGGGAUAACA-GAGUCGUCGCGGGCGAGAGCCCCCAUCGACCCCGCGGUUUGC UACCUCGAUGUCGGCUCUUCCCAUCCUGGGG-GU-GCAGCAGCCCCCAAG-GGUGGGGCU GCCCGCCCAUUAAAGGGGA---ACGUGAGCUGGGUUCAGACCGUCGUGAGACA-GGUCGG UCUCUACCCGCGGGGGG-UGU-GGGCCGCCUGAGGGGAUAGUACGAGAGGAACGG-UAAC CGCUGAAAGCAUCUAAGCGGGAA--------------------- [11] 'Desulfu_mo' GTGGCGGACGGCTGAGTAACACGTGGCTAACC-TACCCTCGGGAG--GGGGATAACACCG GGAAACTGGTGCTAATCCCCCATCGCCCGAGGATGGGGCTACGGCCCATTAGGTTGTTGG CGGGGTAACGGCCCGCCAAGCCGATAATGGGTAGGGGCCGTGAGAGCGGGAGCCCCCAGA TGGGCACTGAGACAAGGGCCCAGGCCCTACGGGGCGCACCAGGCGCGAAACCTCCGCAAT GCGGGAAACCGTGACGGGGCCACCCCGAGTGCCC-AATAAGCGGGGGGCAAGTCTGGTGT CAGCCGCCGCGGTAATAC-CAGCCCCGCGAGTGGTCGGGACGATTATTGGGCCTAAAGC- GCCCGTAGCCGGC--GAC--------GGT-----GAG--GGGCGAAA-GCCGGGGGAGCG AACCGG-ATTAGATACCCGGGTAGTCC--CGGCTG-TAAACGATGAGGGAAGCCG--TTA AGCC-------G--CCTGGGGAGTA-CGGC----CGCAAGGCTGAAACTCAAA-GGAATT GGCG----GGGAGCACCACAA-GGGGTGGAGCCTGCGGTTCAATTGGAG-TCAACG--CC GGGAATCT--ACGA---------------------------------------------- --------GACA-----AGA------GGAGGTGCATGGCCGTCGCCAGC-TCGTGCT-GT GAAGTGTCCGGTTA-AGTCCGGAAACGAGCGAGA-CCCGAGGAAGGAGGGGGCCACGG-- -CAGGTCAGCATGCCCC--------GAACCGGGC-TAC-ACGCGGGCTACAATGGACAGC GG-GGGTTGGGATCGAGGGCTGCAA---CTCGCCCTCGTGAACG-----------AGGAA TCCC---------------TAGTAACCGG----CGGTGAATACGTCCCTGCTCCTTGCAC ACACCGCCCGTCGCTC-CACCCGAGGGG--GGGAGAAGTCGTAACAAGGTAGCCGTACCG GAAGGTGCGGCTGGATCACCTCCTGCGGTGGATGGCTCGGCCGAGGAAGGCCGTGCGATA AGCGGGGTAGGCGTCGCCG-AATGGGACTTGAACGGAAA-CATCTTAGTAG-GGGGAGGA GAAGAAA--CC-AAA---GATCCCCTGAGT-AGGGGCGACCGAAGCAGAGTACCAAGGCT AAATACGGACCGATAGCGT-ACGT-ACCGTGAGGG--A-AAGCTG-AAAAGCACCCCAGG GGGGTGAAAAGAGCCTGAAACCTCCGTCTTGAAACACGGGCCGGGGAGTAGGGAAACCGA GGACCAGAAA--CCGGGCGATC-TA-GGCGGGGGC--------------------A-GG- GCG------AA--GT-----------GGAGGCCC-------------------------- -------GA-GCAAAAGACCAATCTAGCCCGGT-GATAGCTGGTTCCCGCCGAAGGCCGG TAGAG-CCCAACTCCGAAC---------------------------------------CT GCGAG-GGGAACAACCCAGACCGG-GGTTAAGGCCCCAAATAAGTGA---------GACA GCGGGGAGGTGGGCCTAACAGCAG---CCACCTTTAAAGAGTGCGTAACAGCTCACCCGC CGAGGGCCCCGAAGATTGGTCGGGGCTA-AGTAGGCGGGCGCCGCCGTACCGAGAACCGA CACAGGTGCC-------------------------------------CAAGGCAG-GGAA CTCGG-------CAAAT-TGGCC---C-CGTAACTTCGGGAGAAGGCAG----------- ----TGCCTAGGGG-GGCCTGACTGTTTA--ATAAAAACATAG-GTCCCCGCAAGCCCGA AAGTACGG----GGGCTGAATCCTGGCCACTGGCGGTCCGTGAA-CAAC----------- --------CCGGCGAAGCGCCGCTGAAGGCCGGGAGTAACT------CTGACTCTCTTAA GGTAGCCAAATGCCTTGCCGG--------------------------------GTAAGTT CCGGCGCGC----------------------------------------ATGAA------ ------------------------------------TGGATCAACGACTGTCCTGGCACC CCCCGCAG------------GGCGATAAGTCCCCGTGGA-GCTTCACCGCAGCCTGGC-- -----------------------GCTGCGCG---TAGCGTAGGTGGGAGCGGACAACGCC AGGTGGGCG--GTTCGGC-TGGGGCG---------------------------------- --------------------------------------GCACGCCC-G--CGAAAAGATA ACACGGGCGCCCAAAGGTG----------------------------------------- ------------------------------------------------------------ ------GAAACCGCGGCCTAGCGAACGGGTGGGGGCCGGGCAT--GACAG-----AAAAG TTACCCCGGGGATAACA-GAGTCGTCGCGGGCGAGAGCTCCCATCGACCCCGCGGTTTGC TACATCGATGTCGGCTCTTCCCATCCTGGGG-GT-GCAGCAGCCCCCAAG-GGTGGGGCT GCCCGCCCATTAAAGGGGA---ACGTGAGCTGGGTTTAGACCGTCGTGAGACA-GGTCGG ACTCTACCCGCGGGGGG-TGC-GGGCCGCCTGAGGGGACAGTACGAGAGGAACGG-TAAC CGCTGAAAGCATCTAAGCGGGAA--------------------- [12] 'Nanoarc_eq' CCGCCGCACGGCTGAGTAACACGTCGGTAACC-TACCCTCGGGAC--GGGGATAACCCCG GGAAACTGGGGCTAATCCCCGATCGCCCGAGGATGGGCCGGCGGCCCATCAGGTAGTTGG CGGGGTAATGGCCCGCCAAGCCGAAGACGGGTAGGGGCCGTGAGAGCGGGAGCCCCCAGA TCGGCACTGAGACAAGGGCCGAGGCCCTACGGGGCGCACCAGGGGCGAAACCTCCGCAAT GCGGGAAACCGTGACGGGGGGACGGAGAGTGCCGGAATAAGCGGTGGGCAAGAGGGGTGG CAGCCGCCGCGGGAACAC-CCCCACCGCGAGCGGTGGCCGTGATTATTGGGCCTAAAGG- GGCCGTAGCCGGC--GAC--------GGT-----GAG--GGCCGAAG-GCCGGGGGCTAG AACGGG-ATTAGAGACCCCGGTATTCC--CGGCTG-TCAACGCTGAGGGAAGCCG--TTA AGCC-------G--CCTGGGGAGTA-CGGC----CGCAAGGCTGAAACTTAAA-GGAATA GGCG----GGGAGCAC-ACAA-GAGGTGGGGTGCGCGGTTTAATTGGAT-TCGACG--CC GGGAACCT--ACCT---------------------------------------------- --------GACA-----AGA------GGAGGTGCATGGCCGCCGTCAGC-CTGTGCC-GT GAGGTGCCCTGTTA-AGTCAGGAAACAGGCGAGA-CCCGAGGAAGGTGCGGGCGACGG-- -CAGGTATGCATGCCCC--------GAATGGGGC-TAC-ACGCGCGCATCAATGGACAGG GG-GAGTCCAGATCGAGGGCTGCAA---CTCGCCCTCGTGACGG-----------CGGAA TCTC---------------TAGTAGTCGC----CGGCGAATACGTCCCTGCTCCTTGCAC TCACCGCCCGTCAAGC-CACCCGAG----------------------------------- ---------------------------GTGGATGCCTGGGCCGAAGAAGGGCGTGCGATA AGCGGGGGAGGCGTCCCCG-AATGGGACCTGAAGTGAAA-CATCTCAGTAC-CCGCAGGA AAAGAAA--GAGAAA---GATGGCGGGAGT-AGGGGCGACCGAACCAGAGTACCAAGGCT AAATACTGTCCGATAGCGG-ACGT-AGGGTGACCG--A-AAGGTG-AAAGAGAACCCAGG GAGTGAAAAAGAGCCTGAAACCTACGTTCGGGAGCACGTGCGGGGGAGTAGGGAAACCGA CGACCAGAAG--CCCGGCGATC-TA-CCCCGGGGC--------------------A-GG- GTG------AA--GT-----------GGAGGCCC-------------------------- -------GA-GCGATATACCAATCGAGCCGGGT-GATAGCTGGTTCCCGCCGAAAGCCTG TAGAG-CCCAACTCCGAAG---------------------------------------CC GAGAC-GGGAACAACCGAGACCGG-GGTTAAGGCCCCTAATAAGTGA---------GACA CCGGGGATGTGGGACTAGTAGTGT---CCACATCTAAGGAGTGTGCAACAACTCACCCGG CGAGGGCCCCGCAGATGGAC--GGGCCA-AGTAGGCGGGCGTCCCCGTACCGAGAACCGT GACAGGT-TC-------------------------------------TAAGGCAG-GGAA ATCGG-------CAAAT-TGGCC---C-CGTATCTTCGGTAGAAGGCAG----------- ----TGACAAGGGC-GGGCCGACTGTTTA--CTAAAAACATAG-CCTCCGGCAAGCCCGA AAGTACCG----GAGGTGACGCCTGCCCAGTGCCGGTACCTGAA-CAAG----------- --------GGGGCTAAGGGCCGGTAAACGGCGGGAGTAACT------GTAACTCTCTTAA GGTAGCGTAGTCCCTTGCCGG--------------------------------TTAAATG CCGGCTC-T----------------------------------------GCGAA------ ------------------------------------CGGCGTAACGACTGTCCTCGGAGG CCCGGTGG------------GAAGAGAAGACCCCGTGAA-GCTTAACCGCAGCCTGTC-- -----------------------GTTGCGCT---CAGCGTAGCGGGGAGCGGACAGCGGC AGGTGGGCG--GTTTGGC-TGGGGCG---------------------------------- --------------------------------------GCACACCG-C--CGAAAAGATA TCGGCGGTGCCCAAAGGTG----------------------------------------- ------------------------------------------------------------ ------GAAACCGCGGCCTAGCGAACCG-TGGGGCTTCGGGAC--GACGG-----AAAAG CTACTCCGGGGGTAACA-GCTTGGTCGCGGGCGAAAGTTCCCATCGACCCCGCGGTTTGA GACCTCGATGTCGGCTCTTCTCACCCTGGCC-GT-GCAGCAGCGGCCAAG-GGTGGGGGT GTTCACCCATTAAAGAGGA---ACGTGAGCTGGGTTTAGTACGCCGCGAGGCA-GTGTGG ATTCTATCTACCGGGCC-TGT-TCGGCGGCTGAGGGGATAGTACGAAAGGAACGG-TAAG GGCTGAATGCATCTAAGCCCGAA--------------------- [13] 'Methano_ka' CCGGCGGACGGCUCAGUAACACGUGGGUAACC-UACCCUCGGGAC--GGGGAUAACCCCG GGAAAGUGGGGCUAAUCCCCGAUCGCCCGAGGAUGGGCCUGCGGCCGAUUAGGUAGUUGG CGGGGUAACGGCCCGCCAAGCCGAUAAUCGGUACGGGCGGUGAGAGCCGGAGCCCGGAGA CGGGGACUGAGACAAGGCCCCGGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAU GCGGGCAACCGCGACGGGGGGACCCCGAGUGCCGUAGAAAGCGGCGGGCAAGACCGCUGC CAGCCGCCGCGGUAAUAG-CGGCGCCGCAAGUGGUGGCCGCUUUUAUUGGGCCUAAAGG- GGCCGUAGCCGGC--GAC--------GGU-----GAG--GGCCGAAA-GCCGGGGGAGCA AACCGG-AUUAGAUACCCGGGUAGUCC--CGGCUG-UAAACGAUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGCUGAAACUUAAA-GGAAUU GGCG----GGGAGCACCACAA-CCGGUGGAGCCUGCGGUUUAAUUGGAU-UCAACG--CC GGAAACCU--ACGC---------------------------------------------- --------GACA-----AGA------GGAGGUGCAUGGCCGCCGUCAGC-UCGUGCC-GU GAGGUGUCCUGUUA-AGUCAGGUAACGAGCGAGA-CCCGAUGAAAGUGGGGGCGACGG-- -CAGGUCCGUAUGCCCC--------GAAACGGGC-UAC-ACGCGGGCUACAAUGGACAAU GG-GAGUUCGGAUUGCGGGCUGCAA---CUCGCCCGCAUGAAGG-----------UGGAA UCGG---------------UAGUAACCGA----CGGUGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCACGC-CACCCGAG--G--GGGCGAAGUCGUAACAAGGUAGCCGUAGGG GAACCGCCGGGTCG-------------GTGGATGCCTTGGCCGAGGAAGGCCGTGCGATA AGCGGGCGAGGCGTCGCCG-AATGGGACCTGAACTGAAA-CATCTTAGTAG-GCGGAGGA AAAGAAA--GCAACA---GATGCCGTGAGT-AGGGGCGACCGAACCTGAGTACCAACCCT AAATACGGTCCGATAGCGA-ACGT-ACCGTGAGGG--A-AAGGTG-AAAAGAACCCCAGG GGAGTGAAAAGAGCCTGAAACCTTCGTTTTGAAACACGAGGCGGGGAGTAGGGAAACCGA GGACCCGAAA--CCGGCCGATC-TA-GCCCGGGGC--------------------A-GG- GTG------AA--GT-----------GGAGGCCC-------------------------- -------GCTGTGAAAGGCCAATCGAGGCCGGA-GACAGCTGGTTCCCCCCGAAAGCCGG TAGAG-CCAAACTCCGAAC---------------------------------------CC GAGAG-GGGAATAACCCAGACCGG-GGTTAAGGCCCCAAATAAGTGA---------GACA GCGGGGAGGTAGGCTTAGAAGCAG---CCACCTTTAAAGAGTGCGTAACAGCTCACCCGT CGAGGGCCCCGAAAATGGAC-GGGGCTA-AGTAGGGGGGCGCCCCCGTACCGAGAACCGA CACAGGTGCC-------------------------------------TAAGGCAG-GGAA ATCGG-------CAAAT-TGGCC---C-CGTAACTTCGGGAGAAGGCAG----------- ----TGACTAGGGG-GGGCCGACTGTTTA--ATAAAAACATAG-GTCCCGGCTAGCCCGA AAGTACCG----GGGCCGACGCCTGCCCAGTGCCGGTACGTGAA-CAAC----------- --------CGGGTGAAGCGCCGGTAAACGGCGGGGGTAACT------ATAACCCTCTTAA GGTAGCGAAATGCCTTGCCGG--------------------------------TTAAGTA CCGGCTTGC----------------------------------------ATGAA------ ------------------------------------TGGCGTAACGACTGTCCCCGGACC CCCGGCGG------------GAAGCGAAGACCCCGTGGA-GCTTTACCGCAGCCTGCC-- -----------------------GTTGTGTA---TAGCGTAGGTGGGAGCGGACAGCGGT TGGTGGGCG--GTTTGGC-TGGGGCG---------------------------------- --------------------------------------GCACGCCC-C--CGAGAAGGCA TCGGGGGCGCCCAAAGGTG----------------------------------------- ------------------------------------------------------------ ------GAAACCGTGGCCTAGCGAACCGGTGGCGGCCCGGGAT--GACAG-----AAAAG CTACCCCGGGGATAACA-GGGTGGTCGCGGGCAAGAGCCCACATCGACCCCGCGGCTTGC TACCTCGATGTCGGCTCTCCCCATCCTGGCG-GT-GCAGCAGCCGCCAAG-GGTGGGGTT GTTCGCCCATTAAAGGGGA---ACGTGAGCTGGGTTTAGACCGTCGTGAGACA-GGTCGG TCGCTATCTGCCGGGGG-TGT-TGGCCGCCTGAGGGGATAGTACGAGAGGAACGGATAAG GGCTGAAAGCATCCAGGCCCGAA--------------------- [14] 'Pyrococ_ab' CCGGCGGACGGCUCAGUAACACGUCGGUAACC-UACCCUCGGGAG--GGGGAUAACCCCG GGAAACUGGGGCUAAUCCCCCAUCGCCCGAGGAUGGGCCGGCGGCCGAUUAGGUAGUUGG UGGGGUAACGGCCCACCAAGCCGAAGAUCGGUACGGGCCGUGAGAGCGGGAGCCCGGAGA UGGACACUGAGACACGGGUCCAGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAU GCGGGAAACCGCGACGGGGGGACCCCCAGUGCCGUAAUAAGGGCUGGGCAAGGCCGGUGG CAGCCGCCGCGGUAAUAC-CGGCGGCCCGAGUGGUGGCCACUAUUAUUGGGCCUAAAGC- GGCCGUAGCCGGC--GAC--------GGU-----GAG--GGCCGAAG-GCCAGGGGAGCG AACCGG-AUUAGAUACCCGGGUAGUCC--UGGCUG-UAAAGGAUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGCUGAAACUUAAA-GGAAUU GGCG----GGGAGCACUACAA-GGGGUGGAGCGUGCGGUUUAAUUGGAU-UCAACG--CC GGGAACCU--ACGC---------------------------------------------- --------GACG-----AGA------GGAGGUGCAUGGCCGCCGUCAGC-UCGUACC-GU GAGGCGUCCACUUA-AGUGUGGUAACGAGCGAGA-CCCGAGGAAGGGGCGGGCGACGG-- -UAGGUCAGUAUGCCCC--------GAAACGGGC-UAC-ACGCGCGCUACAAUGGACAAU GG-GAGUUCGGAUCGCGGGCUGCAA---CUCGCCCGCGUGAAGC-----------UGGAA UCCC---------------UAGUACCCGG----CGGCGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCACUC-CACCCGAGGGG--GGGAGAAGUCGUAACAAGGUAGCCGUAGGG GAACCUACGGCUCGAUCACCUC----GGAGGAUGGCUCGGCCGACGAAGGGCGUGCGAUA AGCCGGCGAGGCGUUCCCG-AAUGGGACCUGAAUUGAAA-CAUCUUAGUAC-CCGCAGGA AAAGAAA--GC-AAA---GAUGCCGUGAGU-AGGGGCGACCGAACCUGAGUACCAACCCU AAAUACGGACCGAUAGCGA-ACGU-ACCGUGAGGG--A-AAGCUG-AAAAGCACCCCAGG GGGGUGAAAAGAGCCUGAAACCUCCGUCUUGAAACACGGGGCAGGGAGUAGGGAAACCGA AGACCCGAAA--CCGGUCGAUC-UA-GCCCGGGGC--------------------A-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------GCUGUGAAAGGCCAAUCGAGGCCGGA-GAUAGCUGGUUCCCGCCGAAUGCCGG UAGAG-CCAAACUCCGAAC---------------------------------------CC GAGAG-GGGAACAACCCAGACCGG-GGUUAAGGCCCCAAAUAAGUGA---------GACA GCGGGGAGGUAGGCUUAGAAGCAG---CCACCUUUAAAGAGUGCGUAACAGCUCACCCGU CGAGGGCCCCGAAAAUGGAC-GGGGCUA-AGUAGGCGGGCGUGCCCGUACCGAGAACCGA CACAGGUGCC-------------------------------------UAAGGCAG-GGAA CUCGG-------CAAAC-UGGCC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGACUAGGGG-GGCCCGACUGUUUA--AUAAAAACACAG-GUCCCAGCUAGCCCGA AAGUACUG----GGGCCGACGCCUGCCCAGUGCCGGUAUGUGAA-CAAC----------- --------CGGGUGAAGCACCGGUAAACGGCGGGGGUAACU------AUAACCCUCUUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------UUAAAUG CCGACCUGC----------------------------------------AUGAA------ ------------------------------------UGGCGUAACGACUGUCCCCGGACC CCCGGUGG------------GAAGCGAAGACCCCAUGGA-GCUUUACUGCAGCCUGCC-- -----------------------GUUGUGCG---CAGCGUAGGCGGGAGGGGACAGCGGU AGGUGGGCA--GUUUGGC-UGGGGCG---------------------------------- --------------------------------------GCACGCCC-C--CGAAAAGGUA UCGGGGGCGCCCUAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGGGUGGCCUAGCGAACCGGUGGGGGCCAGGGAU--GACAG-----AAAAG CUACCCUGGGGAUAACA-GAGUCGUCUCGGGCGAGAGCCCAUAUCGACCCCGAGGCUUGC UACCUCGCUGUCGGCUCUUCCCAUCCUGGCC-CU-GCAGCAGGGGCCAAG-GGUGGGGGU GUUCACCCAUUAAAGGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUCGG AUGCUAUCUACCGGGGG-UGU-UGGCCGCCUGAGGGGAUAGUACGAGAGGAACAGAUAAG GCCUGAAGGCAUCUAAGGCCGAA--------------------- [15] 'Pyrococ_ho' CCGGCGGACGGCUCAGUAACACGUCGGUAACC-UACCCUCGGGAG--GGGGAUAACCCCG GGAAACUGGGGCUAAUCCCCCAUCGCCCGAGGAUGGGCCGGCGGCCGAUUAGGUAGUUGG UGGGGUAACGGCCCACCAAGCCGAAGAUCGGUACGGGCCGUGAGAGCGGGAGCCCGGAGA UGGACACUGAGACACGGGUCCAGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAU GCGGGAAACCGCGACGGGGGGACCCCCAGUGCCGUAAUAAGGGCUGGGCAAGGCCGGUGG CAGCCGCCGCGGUAAUAC-CGGCGGCCCGAGUGGUGGCCACUAUUAUUGGGCCUAAAGC- GGCCGUAGCCGGC--GAC--------GGU-----GAG--GGCCGAAG-GCCAGGGGAGCG AACCGG-AUUAGAUACCCGGGUAGUCC--UGGCUG-UAAAGGAUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGCUGAAACUUAAA-GGAAUU GGCG----GGGAGCACUACAA-GGGGUGGAGCGUGCGGUUUAAUUGGAU-UCAACG--CC GGGAACCU--ACGC---------------------------------------------- --------GACG-----AGA------GGAGGUGCAUGGCCGCCGUCAGC-UCGUACC-GU GAGGCGUCCACUUA-AGUGUGGUAACGAGCGAGA-CCCGAGGAAGGGGCGGGCGACGG-- -UAGGUCAGUAUGCCCC--------GAAACGGGC-UAC-ACGCGCGCUACAAUGGACAAU GG-GAGUUCGGAUCGCGGGCUGCAA---CUCGCCCGCGUGAAGC-----------UGGAA UCCC---------------UAGUACCCGG----CGGCGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCACUC-CACCCGAGGGG--GGGAGAAGUCGUAACAAGGUAGCCGUAGGG GAACCUACGGCUCGAUCACCUC---------AUGGCUCGGCCGACGAAGGGCGUGCGAUA AGCCGGCGAGGCGUUCCCG-AAUGGGACCUGAAUUGAAA-CAUCUUAGUAC-CCGCAGGA AAAGAAA--GC-AAA---GAUGCCGUGAGU-AGGGGCGACCGAACCUGAGUACCAACCCU AAAUACGGACCGAUAGCGA-ACGU-ACCGUGAGGG--A-AAGCUG-AAAAGCACCCCAGG GGGGUGAAAAGAGCCUGAAACCUCCGUCUUGAAACACGGGGCAGGGAGUAGGGAAACCGA AGACCCGAAA--CCGGUCGAUC-UA-GCCCGGGGC--------------------A-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------GCUGUGAAAGGCCAAUCGAGGCCGGA-GAUAGCUGGUUCCCGCCGAAUGCCGG UAGAG-CCAAACUCCGAAC---------------------------------------CC GAGAG-GGGAACAACCCAGACCGG-GGUUAAGGCCCCAAAUAAGUGA---------GACA GCGGGGAGGUAGGCUUAGAAGCAG---CCACCUUUAAAGAGUGCGUAACAGCUCACCCGU CGAGGGCCCCGAAAAUGGAC-GGGGCUA-AGUAGGCGGGCGUGCCCGUACCGAGAACCGA CACAGGUGCC-------------------------------------UAAGGCAG-GGAA CUCGG-------CAAAC-UGGCC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGACUAGGGG-GGCCCGACUGUUUA--AUAAAAACACAG-GUCCCAGCUAGCCCGA AAGUACUG----GGGCCGACGCCUGCCCAGUGCCGGUAUGUGAA-CAAC----------- --------CGGGUGAAGCACCGGUAAACGGCGGGGGUAACU------AUAACCCUCUUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------UUAAAUG CCGACCUGC----------------------------------------AUGAA------ ------------------------------------UGGCGUAACGACUGUCCCCGGACC CCCGGUGG------------GAAGCGAAGACCCCAUGGA-GCUUUACUGCAGCCUGCC-- -----------------------GUUGUGCG---CAGCGUAGGCGGGAGGGGACAGCGGU AGGUGGGCA--GUUUGGC-UGGGGCG---------------------------------- --------------------------------------GCACGCCC-C--CGAAAAGGUA UCGGGGGCGCCCUAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGGGUGGCCUAGCGAACCGGUGGGGGCCAGGGAU--GACAG-----AAAAG CUACCCUGGGGAUAACA-GAGUCGUCUCGGGCGAGAGCCCAUAUCGACCCCGAGGCUUGC UACCUCGCUGUCGGCUCUCCCCAUCCUGGCC-CU-GCAGCAGGGGCCAAG-GGUGGGGGU GUUCACCCAUUAAAGGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUCGG AUGCUAUCUACCGGGGG-UGU-UGGCCGCCUGAGGGGAUAGUACGAGAGGAACAGAUAAG GCCUGAAGGCAUCUAAGGCCGAA--------------------- [16] 'Thermoc_ce' CCGGCGGACGGCUCAGUAACACGUCGGUAACC-UACCCUCGGGAG--GGGGAUAACCCCG GGAAACUGGGGCUAAUCCCCCAUCGCCCGAGGAUGGGCCGGCGGCCGAUUAGGUAGUUGG UGGGGUAACGGCCCACCAAGCCGAAGAUCGGUACGGGCCAUGAGAGUGGGAGCCCGGAGA UGGACACUGAGACACGGGUCCAGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAU GCGGGCAACCGCGACGGGGGGACCCCCAGUGCCGUAAUAAGGGCUGGGCAAGGCCGGUGG CAGCCGCCGCGGUAAUAC-CGGCGGCCCGAGUGGUGGCCGCUAUUAUUGGGCCUAAAGC- GUCCGUAGCCGGC--GAC--------GGU-----GAG--GGACGAAG-GCCAGGGGAGCG AACCGG-AUUAGAUACCCGGGUAGUCC--UGGCUG-UAAAGGAUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAUGGCUGAAACUUAAA-GGAAUU GGCG----GGGAGCACUACAA-GGGGUGGAGCGUGCGGUUUAAUUGGAU-UCAACG--CC GGGAACCU--ACGC---------------------------------------------- --------GACG-----AGA------GGAGGUGCAUGGCCGCCGUCAGC-UCGUACC-GU GAGGCGUCCACUUA-AGUGUGGUAACGAGCGAGA-CCCGAGGAAGGAGCGGGCGACGG-- -UAGGUCAGUAUGCCCC--------GAAACGGGC-UAC-ACGCGCGCUACAAUGGACAAU GG-GAGUUCGGAUCGCGGGCUGCAA---CUCGCCCGCGUGAAGC-----------UGGAA UCCC---------------UAGUACCCGG----CGGCGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCACUC-CACCCGAGGGG--GGGAGAAGUCGUAACAAGGUAGCCGUAGGG GAACCUACGGCUCGAUCACCUC----GGUGGAUGGCUCGGCCGACGAAGGGCGUGCGAUA AGCCGGCGAGGCGUUCCCG-AAUGGGACCUGAAUUGAAA-CAUCUUAGUAC-CCGCAGGA AAAGAAA--GC-AAA---GAUGCCGUUAGU-AGGGGCGACCGAACCUGAGUACCAACCCU AAAUACGGACCGAUAGCGA-ACGU-ACCGUGAGGG--A-AAGCUG-AAAAGCACCCCCAG GGGGUGAAAAGAGCCUGAAACCUCCGUCUUGGAUCACGGGGCAGGGAGUAGGGAAACCGA AGACCCGAAG--CCGGUCGAUC-UA-GCCCGGGGC--------------------A-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------GAUGUGAAAGGCCAAUCGAGGCCGGC-GAUAGCUGGUUCCCGCCGAAUGCCGG UAGAG-CCAAACUCCGAAC---------------------------------------CC GAGAG-GGGAACAACCCAGACCGG-GGUUAAGGCCCCUAAUAAGUGA---------GACA GCGGGGAGGUAGGCUUAGAAGCAG---CCACCUUUAAAGAGUGCGUAACAGCUCACCCGU CGAGGGCCCCGAAAAUGGAC-GGGGCUA-AGUAGGCGGGCGUGCCCGUACCGAGAACCGA CACAGGUGCC-------------------------------------UAAGGCAG-GGAA CUCGG-------CAAAU-UGGCC---C-CGUAACUUCGGGAUAAGGCAG----------- ----UGACUCGGGG-GACCCGACUGUUUA--GUAAAAACACAG-GUCCCAGCUAGCCCGA AAGUACUG----GGGCCGACGCCUGCCCAGUGCCGGUAUGUGAA-CAAC----------- --------CGGGUGAAGCACCGGUAAACGGCGGGGGUAACU------AUAACCCUCUUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------UUAAAUG CCGACCUGC----------------------------------------AUGAA------ ------------------------------------UGGCGUAACGACUGUCCCCGGACC UCCGGUGG------------GAAGCGAAGACCCCAUGGA-GCUUUACUGCAGCCUGCC-- -----------------------GUUGUGCG---CAGCGUAGGCGGGAGGGGACAGCGGU AGGUGGGCA--GUUUGGC-UGGGGCG---------------------------------- --------------------------------------GCACACCC-U--CGAAAAGGUA UCGAGGGUGCCCUAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCGUGGCCUAGCGAACCGGUGGGGGCCAGGGAU--GACAG-----AAAAG CUACCCUGGGGAUAACA-GAGUCGUCUCGGGCGAGAGCCCAUAUCGACCCCGAGGCUUGC UACCUCGCUGUCGGCUCUUCCCAUCCUGGCC-CU-GCAGCAGGGGCCAAG-GGUGGGGGU GUUCACCCAUUAAAGGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUCGG AUGCUAUCUACCGGAGG-UGU-UGGCCGCCUGAGGGGACAGUACGAGAGGAACAGAUAAG GCCUGAAAGCAUCUAAGGCCGAA--------------------- [17] 'Pyrococ_fu' CCGGCGGACGGCUCAGUAACACGUCGGUAACC-UACCCUCGGGAG--GGGGAUAACCCCG GGAAACUGGGGCUAAUCCCCCAUCGCCCGAGGAUGCGGCGGCGGCCGAUUAGGUAGUUGG UGGGGUAACGGCCCACCAAGCCGAAGAUCGGUACGGGCCGUGAGAGCGGGAGCCCGGAGA UGGACACUGAGACACGGGUCCAGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAU GCGGGAAACCGCGACGGGGGGACCCCCAGUGCCGUAAUAAGGGCUGGGCAAGGCCGGUGG CAGCCGCCGCGGUAAUAC-CGGCGGCCCGAGUGGUGGCCACUAUUAUUGGGCCUAAAGC- GGCCGUAGCCGGC--GAC--------GGU-----GAG--CGCGGAAG-GCCAGGGGAGCG AACCGG-AUUAGAUACCCGGGUAGUCC--UGGCUG-UAAAGGAUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGCUGAAACUUAAA-GGAAUU GGCG----GGGAGCACUACAA-GGGGUGGAGCGUGCGGUUUAAUUGGAU-UCAACG--CC GGGAACCU--ACGC---------------------------------------------- --------GACG-----AGA------GGAGGUGCAUGGCCGCCGUCAGC-UCGUACC-GU GAGGCGUCCACUUA-AGUGUGGUAACGAGCGAGA-CCCGAGGAAGGGGCGGGCGACGG-- -UAGGUCAGUAUGCCCC--------GAAACGGGC-UAC-ACGCGCGCUACAAUGGACAAU GG-GAGUUCGGAUCGCGGGCUGCAA---CUCGCCCGCGUGAAGC-----------UGGAA UCCC---------------UAGUACCCGG----CGGCGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCACUC-CACCCGAGGGG--GGGAGAAGUCGUAACAAGGUAACCGUAGGG GAACCUACGGCUCGAUCACCUC----GGTGGATGGCTCGGCCGACGAAGGGCGTGCGATA AGCCGGCGAGGCGTTCCCG-AATGGGACCTGAATTGAAA-CATCTTAGTAC-CCGCAGGA AAAGAAA--GC-AAA---GATGCCGTGAGT-AGGGGCGACCGAACCTGAGTACCAACCCT AAATACGGACCGATAGCGA-ACGT-ACCGTGAGGG--A-AAGCTG-AAAAGCACCCCAGG GGGGTGAAAAGAGCCTGAAACCTCCGTCTTGAAACACGGGGCAGGGAGTAGGGAAACCGA AGACCCGAAA--CCGGTCGATC-TA-GCCCGGGGC--------------------A-GG- GTG------AA--GT-----------GGAGGCCC-------------------------- -------GCTGTGAAAGGCCAATCGAGGCCGGA-GATAGCTGGTTCCCGCCGAATGCCGG TAGAG-CCAAACTCCGAAC---------------------------------------CC GAGAG-GGGAACAACCCAGACCGG-GGTTAAGGCCCCAAATAAGTGA---------GACA GCGGGGAGGTAGGCTTAGAAGCAG---CCACCTTTAAAGAGTGCGTAACAGCTCACCCGT CGAGGGCCCCGAAAATGGAC-GGGGCTA-AGTAGGCGGGCGTGCCCGTACCGAGAACCGA CACAGGTGCC-------------------------------------TAAGGCAG-GGAA CTCGG-------CAAAC-TGGCC---C-CGTAACTTCGGGAGAAGGCAG----------- ----TGACTAGGGG-GGCCCGACTGTTTA--ATAAAAACACAG-GTCCCAGCTAGCCCGA AAGTACTG----GGGCCGACGCCTGCCCAGTGCCGGTATGTGAA-CAAC----------- --------CGGGTGAAGCACCGGTAAACGGCGGGGGTAACT------ATAACCCTCTTAA GGTAGCGAAATTCCTTGTCGG--------------------------------TTAAATG CCGACCTGC----------------------------------------ATGAA------ ------------------------------------TGGCGTAACGACTGTCCCCGGACC CCCGGTGG------------GAAGCGAAGACCCCATGGA-GCTTTACTGCAGCCTGCC-- -----------------------GTTGTGCG---CAGCGTAGGCGGGAGGGGACAGCGGT AGGTGGGCA--GTTTGGC-TGGGGCG---------------------------------- --------------------------------------GCACGCCT-C--CGAAAAGGTA TCGGAGGCGCCCTAAGGTC----------------------------------------- ------------------------------------------------------------ ------GAAAGGGTGGCCTAGCGAACCGGTGGGGGCCAGGGAT--GACAG-----AAAAG CTACCCTGGGGATAACA-GAGTCGTCTCGGGCGAGAGCCCATATCGACCCCGAGGCTTGC TACCTCGCTGTCGGCTCTTCCCATCCTGGCC-CT-GCAGCAGGGGCCAAG-GGTGGGGGT GTTCACCCATTAAAGGGGA---ACGTGAGCTGGGTTTAGACCGTCGTGAGACA-GGTCGG ATGCTATCTACCGGGGG-TGT-TGGCCGCCTGAGGGGATAGTACGAGAGGAACAGATAAG GCCTGAAAGCATCTAAGGCCGAA--------------------- [18] 'Archaeo_fu' CCGGCGGACGGCUCAGUAACACGUGGACAACC-UGCCCUCGGGUG--GGGGAUAACCCCG GGAAACUGGGGCUAAUCCCCCAUCGCCCGAGGAUGGGUCUGCGGCGGAUUAGGUUGUUGG UGGGGUAACGGCCCACCAAGCCGAAGAUCCGUACGGGCCAUGAGAGUGGGAGCCCGGAGA UGGACCCUGAGACACGGGUCCAGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAU GCGGGAAACCGCGACGGGGUCAGCCGGAGUGCUCGAGCAAGGGCCGGGCAAGGCCGGUGG CAGCCGCCGCGGUAAUAC-CGGCGGCCCGAGUGGCGGCCACUUUUAUUGGGCCUAAAGC- GUCCGUAGCCGGC--GAC--------GGU-----GAG--GGACGAAG-GCCAGGGGAGCG AACCGG-AUUAGAUACCCGGGUAGUCC--UGGCUG-UAAACGAUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGCUGAAACUUAAA-GGAAUU GGCG----GGGAGCACUACAA-CGGGUGGAGCCUGCGGUUUAAUUGGAU-UCAACG--CC GGGAAGCU--ACGA---------------------------------------------- --------GACA-----AGA------GGUGGUGCAUGGCCGCCGUCAGU-UCGUACU-GU GAAGCAUCCUGUUA-AGUCAGGCAACGAGCGAGA-CCCGAGGAAGGUGCGGGCAACGG-- -CAGGUCCGUAUGCCCC--------GAAUCGGGC-UAC-ACGCGGGCUACAAUGGACAAU GG-GACCUGGGAUCGAGGGCUGCAA---CUCGCCCUCGUGAACC-----------UGGAA UCCG---------------UAGUAAUCGG----CGGUGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCAAGC-CACCCGAGGGG--GGGCUAAGUCGUAACAAGGUAGCCGUAGGG GAAUCUGCGGCUGGAUCACCU-----GGUGGAUGGCUCGGCCGACGAAGGGCGUGCGAAA AGCGGGGGAGGCGUUCCCG-AAUGGGAUAUGAAAGGAAA-CAUCUGUGUAC-CCGCAGGA AAAGAAA--GCAAAC---GAUGCCGUGAGU-AGGGGCGACCGAACCUGAGUACCAAGGCU AAAUACGGUCCGAUAGCGC-AAGU-AGGGUGACCG--A-AAGCUG-AAAAGAACCCCAGG GGAGUGAAAAGAGCCUGAAAUCUACGUUCUGAAGAACGGGCCAGGGAGUAGGGAAACCGA CGACCCGAAG--CCGGGCGAUC-UA-GGCGGGGGC--------------------A-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------GCAGUGAAAGUCCAAUCGAGCCCGGG-GAUAGCUGGUUCCCCCCGAGAACCGG UAGAG-CCAAACUCCGAAU---------------------------------------CC GAGAG-GGAGACAACCCAGACCGG-GGUUAAGGCCCCUAAUAAGUGA---------GACA GCGGGGAGGUAGGCUUAGAAGCAG---CCACCUUUAAAGAGUGCGUAACAGCUCACCCGC CGAGGGCGCCGAAAAUGGAC-GGGGCUA-AGUAGGGGGGCGUGCCCGUACCGAGAACCGA CACAGGUG-C-------------------------------------UAAGGCAG-GGAA UUCGG-------CAAGU-UGGCC---C-CGUAUCUUUGGUAGAAGGCAG----------- ----UGACUAGGGG-GGAGCGACUGUUUA--CUAAAAACACAG-GGGGCUGCAAUCCGGC AACUACAG----CCCCUGAGUCCUGCCCAGUGCGGGUACCUGAA-CAAC----------- --------CGGGCGAAGGGCCCGUAAACGGCGGGGGUAACU------AUGACCCUCUUAA GGUAGCGUAAUACCUUGCCGC--------------------------------UUAAUUG GCGGCUUGC----------------------------------------AUGAA------ ------------------------------------CGGAUUAACGACUGUCCCCGGACC CCCGUUGG------------GAAGCGAAGACCCUGUGGA-GCUUUACUGCAGCCUGCC-- -----------------------GUUGUGCG---CAGGGUAGGCGGGAGGGGACAUCGGU AGGUGGGCA--GUUUGGG-UGGGGCG---------------------------------- --------------------------------------CCACUCCC-C--CGAAAAGGUA UCGGGGGAGCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGGCGGGCCUAGCGAACCGGUGAGGCCGGGUGAC--GACAG-----AAAAG CUACCCCAGGGAUAACA-GAGUUGUCCCCGGCGAGAGUACAUAUCGACCCGGGGGCUUGC UACCUCGAUGUCGGCUCUCCCCAUCCUGGCC-GU-GCAGCAGCGGCCAAG-GGUGAGGUU GUUCGCCUAUUAAAGGGGA---UCGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUCGG UUGCUAUCUAACGGGGGUGUC-AGGGCGGCUGAGGGGAUAGUACGAGAGGAACGAUUAAA GGCUGAAAGCAUCUAAGCCUGAA--------------------- [19] 'Methano_ja' CCGGCGCACGGCUCAGUAACACGUGGCUAACC-UACCCUCGGGUG--GGGGAUAACCUCG GGAAACUGAGGCUAAUCCCCCAUUGCCCGAGGAUGGGGCUGCGGCGGAUUAGGUAGUUGG UGGGGUAACGGCCCACCAAGCCUACGAUCCGUACGGGCCCUGAGAGGGGGAGCCCGGAGA UGGACACUGAGACACGGGUCCAGGCC-UACGGGGCGCAGCAGGCGCGAAACCUCCGCAAU GCGCGAAAGCGCGACGGGGGGACCCCGAGUGCCCAAAUAAGGGCUGGGCAAGUCCGGUGC CAGCAGCCGCGGUAAUAC-CGGCGGCCCAAGUGGUGGCCACUGUUAUUGGGCCUAAAGC- GUCCGUAGCCGGC--GAC--------GGU-----GAG--GGACGAAG-GCCAGGGGAGCA AACCGG-AUUAGAUACCCGGGUAGUCC--UGGCUG-UAAACUCUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGU----CGCAAGACUGAAACUUAAA-GGAAUU GGCG----GGGAGCACUACAA-CGGGUGGAGCCUGCGGUUUAAUUGGAU-UCAACG--CC GGGCAUCU--ACGC---------------------------------------------- --------GACG-----AGA------GGUGGUGCAUGGCCGUCGUCAGC-UCGUACC-GU GAGGCGUCCUGUUA-AGUCAGGUAACGAGCGAGA-CCCGAGGAAGGUGCGGGCAACGA-- -CAGGUCCGCAUGCCCC--------GAAUCGGGC-UAC-ACGCGGGCUACAAUGGACAAU GG-GAGUCCGGAUCGAGGGCUGUAA---CUCGCCCUCGUGAAGC-----------CGGAA UCCG---------------UAGUAAUCGG----CGGUGAAUGCGUCCCUGCUCCUUGCAC ACACCGCCCGUCACGC-CACCCGAGGGG--GGGCGAAGUCGUAACAAGGUAGCCGUAGGG GAAC-UGCGGCUGGAUCACCU-----GGUGGAUGGCUCGGCCGAGGAAGGGCGUGCGAUA AGCGGGGGAGGCGUCCCCG-AAUGGGACUUGAAAAGAAG-CAUCCGAGUAC-CCGCAGGA AAAGAAA--CCAAC----GAUGCCGGGAGU-AGGGGCGACCGAACCUGAGUACCAACCCU AAAUACGGACCGAUAGCGA-ACGU-ACCGUGAGGG--A-AAGCUG-AAAAGCACCCCGGG G-GGUGAAAAGAGCCUGAAACCUCCGUUUCGAAAAACGGGCCGGGGAGUAGGGAAACCGA CGACCCGAAA--CCGGGCGAUC-UA-GGCCGGGGU--------------------A-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------GCAGUGAAAAGCCAAUCGAGCCCGGA-GAUAGCUGGUUCCCCCCGAAAGCCGG UAGAG-CCAAACUCCGAAC---------------------------------------CC GAGAG-GGGAACAACCCGGACCCG-GGUUAAGGCCCCUAAUAAGUGA---------GACA GCGGGGAGGUUGGCUUAGAAGCAG---CCACCUUUAAAGAGUGCGUAACAGCUCACCCGU CGAGGGCCCCGAAGAUAACG-GGGG-CA-AGUAGGGGGGCGUCCCCGUACCCAGAACCGA CACAGGUGCC-------------------------------------UAAGGCAG-GGAA GUCGG-------CAAAU-UGGCC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGGCCAGGGG-GGUCCGACUGUUUA--AUAAAAACACAG-GUCUUGGCUAGCCCGU AAGUACCA----AGGCCGACGCCUGCCCAGUGCCGGUACGUGAA-CAAC----------- --------CGGGCGAAGCGCCGGUAAACGGCGGGGGUAACU------AUAACCCUCUUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------AUGAA------ ------------------------------------UGGCGUAACGACUGUCCCGGGACC CCCAGUGG------------GAAGCGAAGACCCCGUGGA-GCUUUACUGCAGCCUGUC-- -----------------------GUUGUGCA---CAGCGUAGGUGGGAGCGGACACCGGC AGGUGGGCA--GUUUGGC-UGGGGCG---------------------------------- --------------------------------------GCACCCCC-C--UGAAAAGGCA UCAGGGGGGCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCCGGGCCUAGCGAACCGAUGGGGGCCAGGGAU--AACAG-----AAAAG CUACCCCGGGGAUAACA-GAGUUGUCGCGGGCAAGAGCCCAUAUCGACCCCGCGGCUUGC UACAUCGAUGUCGGUUCUUCCCAUCCUGGGC-CU-GCAGCAGGGCCCAAG-GGUGGGGCU GUUCGCCCAUUAAAGGGGA---UCGUGAGCUGGGUUUAAACCGUCGUGAGACA-GGUUGG UUGCUAUCUGCUGGGGG-UGU-UGGCCGCCUGAGGGGAUAGUACGAGAGGAACGAAUAAG GGCUGAAGGCAUCUAAGCCCGAA--------------------- [20] 'Methano_va' AUGGCGGACGGCUCAUUAACACGUGGUUAACU-UAACCUCAGGUG--GAGCAUAACCUUG GGAAACUGAGGAUAAUUCUCCAU-GCCCGAGGAUAGGACUGCGCUCGAUUAGGUAGUUGG UGGGGUAAUGGCCCACCAAGCCUACGAUCGAUACGGGCCUUGAGAGAGGGAGCCCGGAGA UGGGGACUGAGACACGGCCCCAGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAU GCACGAAAGUGCGACGGGGGGACCCCAAGUGCUCAAAUAAGGGCUGGGCAAGUUCGGUGC CAGCAGCCGCGGUAAUAC-CGACGGCCCGAGUGGUAGCCACUCUUAUUGGGCCUAAAGC- GUCCGUAGCCGGC--GAC--------GGU-----GAG--GGACGAAA-GCCAGGGGCGCG AACCGG-AUUAGAUACCCGGGUAGUCC--UGGCCG-UAAACUCUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGU----CGCAAGACUGAAACUUAAA-GGAAUU GGCG----GGGAGCACCACAA-CGGGUGGAGCCUGCGGUUUAAUUGGAU-UCAACG--CC GGGCAUCU--ACGC---------------------------------------------- --------GACA-----AGA------GGUGGUGCAUGGCCAUCGUCAGC-UCGUACC-GC GAGGCGUCCUGUUA-AGUCAGGUAACGAGCGAGA-CCCGAGGAAGGAGCGGGCAACGA-- -UAGGUCCGCAUGCCCC--------GAAUCGGGC-UAC-ACGCGGGCUACAAUGGACAAU GG-GAGUUCGGAUCGUGGGCUGUAA---CUCGCCCACGUGAAGC-----------UGGAA UCCG---------------UAGUAAUCGG----CGGUGAAUGUGUCCCUGCUCCUUGCAC ACACCGCCCGUCACAC-CACCCGAGGGG--GGGUGAAGUCGUAACAAGGUAGCCGUAGGG GAACCUGCGGCUGGAUCACCU-----GGGGAAUGGCUUGGCCGAUGAAGGACGUGCGAUA AGCAGGCGAGGCGUUUCCG-AAUGGGACUUGGAUUGAAG-CAUCUUAGUAC-CCGCAGGA AAAGAAA--UCAAC----GAUUCCGUUAGU-AGAGGCGAUUGAACCUGAGUACCAACUCU AAAUACGGACCGAUAGCGU-ACGU-ACCGCGAGGG--A-AAGCUG-AAAAGCACCCUAGG G-UGUGAAAAGAGCCUGAAACCUCCGUUUCGAAAAACGGGCCGGGGAGUAGGGAAACCAA CGACCCGAAA--CCGGGCGAUC-UA-GGCCGGGGC--------------------A-AG- GUG------AA--GU-----------GGAGGCCU-------------------------- -------GCAGUGAAAGGCCAAUCGAGCCCGGA-GAUAGCUGGUUCCCCUCGAAGGCCGG UAGAG-CCAAACUCCGAAC---------------------------------------CU GAGAC-GGGAAUAGCCGAGACUUG-GGUUAAGGCCCCUAAUAAGUGA---------GACA GCAGGGAGGUUGGCUUAGAAGCAG---CCACCUUUAAAGAGUGCGUAACAGCUCACCUGU CGAGGGCCCCGAAAAUGGAC-GGGG-CA-AGUAGGGGGGCGUUCCCGUACCCAGAACCGA CACUGGUGCC-------------------------------------UAAGGCAG-GGAA GUCGG-------CAAAU-UGGCU---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGACCAGGGA-GGUCCGACUGUUUA--AUACAAACAUAG-GUCUUAGCGAGCCUGA AAAUACUA----AGGCCGACGCCUGCCCAGUGCUGGUACGUGAA-CAAC----------- --------CGGGCGAAGCGCCAGUAAACGGCGGGGGUAACU------AUAACCCUCUUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GCAAGUU CCGACCUGC----------------------------------------AUGAA------ ------------------------------------UGGCGUAACGACUGUCCCCGAACU UCCAGUGG------------GAAGCGAAGACCCCGUGGA-GCUUUACUGCAGCCUGUC-- -----------------------GUUGUGUA---CAGUGUAGGUGGGAGCGGACACCGGU AGGUGGGCA--GUUUGGC-UGGGGCG---------------------------------- --------------------------------------GUACCCUC-C--UAAAAAUGCA UCAGGAGGGCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCCGGGCCUAACGAACCGAUGGGGGCCAGGGAU--GACAA-----AAAAG CUACCCCGGGGAUAACA-GAGUUGUCGCGGGCAAGAGCCCAUAUCGACCCCGCGGCUUGC UACCUCGAUGUCGGUUUUUCCCAUCCUGGGU-CU-GCAGCAGGACCCAAG-GGUGGGGCU GUUCGCCCAUUAAAGGGGA---UCAUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUGG UUGCUAUCUGCUGGAUG-UGU-AGGCUGUCUGAGGGAAUAGUACGAGAGGAACGGAUAAG AGCUGAAAGCAUCUAAGCUCGAA--------------------- [21] 'Methano_th' GUGGCGAACGGCUCAGUAACACGUGGAUAACC-UGCCCUUGGGAC--UGGGAUAACCCCG GGAAACUGGGGAUAAACCUGGAUUGCCCAAGGAUGGGUCUGCGGCCGAUUAGGUAGUUGG UAGGGUAACGGCCUACCAAGCCCAUCAUCGGUACGGGUUGUGAGAGCAAGAGCCCGGAGA UGGAACCUGAGACAAGGUUCCAGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAU GCACGCAAGUGCGACGGGGGAACCCCAAGUGC-CAAAUAAGGGCUGGGCAAGACCGGUGC CAGCCGCCGCGGUAACAC-CGGCAGCUCAAGUGGUAGCCGCUUUUAUUGGGCCUAAAGC- GUCCGUAGCCGGU--GAC--------GGU-----GAG--GGACGAAA-GCUAGGGGCGCG AACCGG-AUUAGAUACCCGGGUAGUCC--UGGCCG-UAAACGAUGAGGGAAGCUG--UUA AGCC-------G--CCUGGGAAGUA-CGGC----CGCAAGGCUGAAACUUAAA-GGAAUU GGCG----GGGAGCACCACAA-CGCGUGGAGCCUGCGGUUUAAUUGGAU-UCAACG--CC GGACAUCU--ACGC---------------------------------------------- --------GACA-----AGA------GGAGGUGCAUGGCCGCCGUCAGC-UCGUACC-GU GAGGCGUCCUGUUA-AGUCAGGCAACGAGCGAGA-CCCGAGGAAGGAGUGGACGACGG-- -UAGGUCCGUAUGCCCC--------GAAUCGGGC-AAC-ACGCGGGCUACAAUGGACAAU GG-GAGUUCGGAUCGAGGGCUGUAA---CUCGCCCUCGUGAAGC-----------UGGAA UGCG---------------UAGUAAUCGG----CGGUGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCACGC-CACCCAAAGGA--GGGCGAAGUCGUAACAAGGUAGCCGUAGGG GAACCUGCGGCUGGAUCACCU-----GGGGGAUGGCUUGGCUGAUGAAGGCCGUGCGAUA AGCAGGGGAGGAGUUGCCG-AAUGGGACUUGAACUGAAA-CAUCUUAGUAG-GCGGAGGA AGAGAAA--GCAAUA---GAUGCCGUGAGU-AAUGGCGAAUGAACCUGAGUAGCAAUCCU AAACACGGUCCGAUAGCGA-ACGU-ACCGUGAGGG--A-AAGCUG-AAAAGUACCCCAGG GGUGUGAAAAGUGCCUGAAACCUCCGUCUUGAAACACGGGCCAGGGAGUAGGGAAACCGA AAACCCGAAG--CCGGUCGAUC-UA-GCCCUGGGU--------------------A-GG- AUG------AA--GU-----------GGAGGUCC-------------------------- -------GCAGUGAAAGGCCAAUCAAGGCCGGU-GACAGCUGGUUCCACCCGAAAGCCGG UAGAG-CAAAACUCCGAAC---------------------------------------UC GAGAG-AGGAACAACUCAGACUGG-GGUUAAGGUCCCUAAUAAGUCA---------GACA AUGGGAAGGUGGGCUUAGAAGCAG---CCACCUUUAAAGAGUUCGUAACAGAUCACCCAU CGAGGGCACCGAAAAUGGAG-GGGAAUA-AGUAGGGUGGCGUCCCCGUACCGAGAUCCGA CACUGGUGCC-------------------------------------UAAGGCAG-GGAA AUCGG-------CAAAU-UAGCC---C-CGUAACUUUGGGAGAAGGCAG----------- ----UGACAGGGGG-GGCCCGACUGUUUA--AUAAAAACAUAG-CUCCUAGCUAGCCCGU GAGUACUG----GGGGCGACACCUGCCCAGUGCCGGCACGUGAA-CAAC----------- --------GGGGUGAAGCGCCGGUAAACGGCGGGGGUAACU------AUAACCCUCUUAA GGUAGCGAAAUGCCUUGCCGG--------------------------------AUAAGUA CCGGCCUGC----------------------------------------AUGAA------ ------------------------------------UGGUUGAACGACUGUCCCUAGACU CCCAGUGG------------GAAGCGAAGACCCCGUAGA-GCUUUACUGCAGUCUGCU-- -----------------------GUUGUAUG---CAGUGUAGGUGGGAGGGGACAUCGGU AGAUGGGCA--GUUUGGC-UGGGGCG---------------------------------- --------------------------------------GCACGCGC-U--UGAAAUGGUA UCAAGCGCGCCCUAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAGAGCAGGGCCUAGCGAACCGGUGGGGGCCUGGGAU--GACAG-----AAAAG CUACCUCGGGGAUAACU-GGGUGGUCGCAGGCAAGAGCCCAUAUCGACCCUGCGGCUUGC UACUUCGAUGUCGGUUCUUUCCAUCCUGGGU-GU-GCAGCAGCACCAAAG-GGUGGGGUU GUUCGCCCAUUAAAGGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUGG UUGCUAUCUACUGGGAG-UGUGUGGUUGCCUGAGGGGACAGUACGAGAGGAACGGAUAAA GGCUGAAGGCAUCUAAGCCUGAG--------------------- [22] 'Methano_ac' ATGGCGTACTGCTCAGTAACACGTGGATAACC-TGCCCTTGGGTC--CGGCATAACCCCG GGAAACTGGGGATAATACCGGATTGCCCAAGGATGGGTCTGCGGCCTATCAGGTAGTAGT GGGTGTAACGTACCTACTAGCCGACAACGGGTACGGGTTGTGAGAGCAAGAGCCCGGAGA TGGATTCTGAGACATGAATCCAGGCCCTACGGGGCGCAGCAGGCGCGAAAACTTTACAAT GCGGGAAACCGTGATAAGGGGACACCGAGTGCCAGAGCAAGGGCCGGGCAAGACCGGTGC CAGCCGCCGCGGTAACAC-CGGCGGCCCGAGTGGTGATCGTGATTATTGGGTCTAAAGG- GTCCGTAGCCGGC--GAC--------GGT-----GAG--GGACGAAA-GCTGGGGGCACG AACCGG-ATTAGATACCCGGGTAGTCC--CAGCCG-TAAACGATGAGGGAAGCCG--TGA AGCC-------A--CCTGGGAAGTA-CGGC----CGCAAGGCTGAAACTTAAA-GGAATT GGCG----GGGAGCACAACAA-CGGGTGGAGCCTGCGGTTTAATTGGAC-TCAACG--CC GGACAACT--ACAC---------------------------------------------- --------GACA-----AGA------GGAGGTGCATGGCCGTCGCCAGT-TCGTACT-GT GAAGCATCCTGTTA-AGTCAGGCAACGAGCGAGA-CCCGAGGAAGGTGCGGGCCACGG-- -TAGGTCAGTATGCCCC--------GAATTGGGC-TAC-ACGCGGGCTACAATGAACAAT GG-GAGTTCGGATCGAGGGCTGTAA---CTCGCCCTCGTGAAGC-----------TGGAA TCCG---------------TAGTAATCGG----CGGTGAATACGTCCCTGCTCCTTGCAC ACACCGCCCGTCAAAC-CACCCGAGGGG--GGGTTAAGGAATTATG-------------- --------------------------GGTGGATGGCTCGGCTTATGAAGGACGTGCGATA AGCGGGGTAGGTGTTTCCG-AATGGGACCTGAATTGAAA-CATCTCAGTAG-GAGCGGGA AAAGAAA--TCAATT---GATGCCGTAAGT-AACGGCGAGTGAACCTGAGTACCAAAACT AAATACTGACCGATAGCGA-AAGT-AGGGTGACCG--A-ACGCTG-AAAAGTACCCCAGG GAGGTGCAAAGTGCCTGAAACCTACGTTTTGAAGAACGGGCCAGGGAGTAGCGAAAGCAA CGACCCGAAG--CCGGGTGATC-TA-GGCGTGGGC--------------------A-GG- TTG------AA--GT-----------GGAGGACC-------------------------- -------GTAGTGAAATGCTAATCTAACCCGGC-ATCCGCTGGTTCCTTCCGAAAACCAG TAGAG-CCAAACTCCAAAC---------------------------------------CC GTAAG-GGAGACAACCCAGCCCGT-GGTTAAGGTCCCCAATAAGTGA---------GACA GCTGGAAGGTTAGCTTAGAAGCAG---CTACCTTCAAAGAGTGCGTAACAGCTCACCAGT CGAGGGCCCCGAAAATTGAC-GGGGCTA-AGTAGGAAGGCGTTGCCGTACCGAGAACTGA CACAGGTGCC-------------------------------------TAAGGCAG-GGAA TTCGG-------CAAAT-TAGCT---C-CGTAACTTCGGGATAAGGCAG----------- ----TGACCAGGGG-GCTCTAACTGTCTA--ATACCAACATAG-GAGATTGCAAACCCGT AAGTACAA----TCTCTGAATCCTGCTCAGTGCAGGTACCTGAA-CAAC----------- --------GGGAAGAAGGGCCTGTAAACAGCGGGGGTAACT------ATGACCCTCTTAA GGTAGCGTAGTACCTTGTCGC--------------------------------TTAATTG GCGACTTGC----------------------------------------ATGAA------ ------------------------------------TGGATCAATGACTGTCCCTAAACC TCTAGGGG------------GAAGTGAAGACCCCGTGGA-GCTTTACTGCAGCCTGTC-- -----------------------GTTGTGTA---CAGTGTAGGTAGGAGGGGACCCCGAT AGGTGGGCA--GTTTGCC-TGGGGCG---------------------------------- --------------------------------------GGACGCCC-T--TGAAAAGATA TCAAGGGCGCGCAATGGTC----------------------------------------- ------------------------------------------------------------ ------GAAAGTCGGCTCTAGCGAACTGGTGGGGGCCAAAAAT--GACAG-----AAAAG TTACCCCGGGGATAATT-GAGTCGTTGCCGGCAAGAGTACATATCGACCCGGCAGCTTGC TACCTCGATGTCGGTTCTTTCCATCCTGGCC-GT-GCAGCAGCGGCCAAG-GGTGAGGTT GTTCGCCTATTAAAGGAGA---TCGTGAGCTGGGTTTAGACCGTCGTGAGACA-GGTCGG TTACTATCTACTAGAGG-TGC-CCGAGGTCTGCGGGTATAGTACGAGAGGAACCAATAAG AGCTGAATGCATCTAAGCTCGAA--------------------- [23] 'Methano_ma' AUGGCGGACGGCUCAUUAACACGUGGUUAACA-UACCCUCAGGUG--GGGGAUAACCUUG GGAAACUGAGGAUAAUACCCCAUCGCCUGAGGAUUGGACUGCGCUCGAUUAGGUAGUUGG UGGGGUAAUGGCCCACCAAGCCUACGAUCGGUACGGGCCUUGAGAGAGGAAGCCCGGAGA UGGGGACUGAGACACGGCCCCAGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAU GCACGAAAGUGCGACGGGGGGAUCCCAAGUGCUCAAAUAAGGGCUGGGCAAGUUCGGUGC CAGCAGCCGCGGUAACAC-CGACGGCCCGAGUGGUGGCCACUUUUAUUGGGCCUAAAGC- GUCCGUAGCCGGC--GAC--------GGU-----GAG--GGACGAAA-GCCAGGGGCGCG AACCGG-AUUAGAUACCCGGGUAGUCC--UGGCCG-UAAACUUUGAGGGAAGCCG--UUA AGCC-------G--CCUGGGGAGUA-CGGU----CGCAAGACUGAAACUUAAA-GGAAUU GGCG----GGGAGCACCACAA-CGGGUGGAGCCUGCGGUUUAAUUGGAU-UCAACG--CC GGGCAUCU--ACGC---------------------------------------------- --------GACA-----AGA------GGUGGUGCAUGGCCAUCGUCAGC-UCGUACC-GC GAGGCGUCCUGUUA-AGUCAGGUAACGAGCGAGA-CCCGAGGAAGGAGCGGGCAACGA-- -UAGGUCCGCAUGCCCC--------GAAUCGGGC-UAC-ACGCGGGCUACAAUGGACAAU GG-GAGUUCGGAUCGUGGGCUGUAA---CUCGCCCACGUGAAGC-----------UGGAA UCCG---------------UAGUAAUCGG----CGGUGAAUGUGUCCCUGCUCCUUGCAC ACACCGCCCGUCACAC-CACCCGAGGGG--GGGU------GTTATG-------------- --------------------------GGTGGATGGCTCGGCTGATGAAGGACGTGCGATA AGCGGGGTAGGTGTCTCCG-AATGGGACCTGAATTGAAA-CATCTCAGTAG-GAGCTGGA AAAGAAA--TCAAAC---GATGCCGTAAGT-AACGGCGAGTGAACCTGAGTACCAAAACT AAATACTGACCGATAGCGA-AAGT-AGGGTGACCG--A-ACGCTG-AAAAGTACCCCAGG GAGGTGCAAAGTGCCTGAAACCTACGTTTTGAAGAACGGGCCAGGGAGTAGCGAAAGCAA CGACCCGAAG--CCGGGTGATC-TA-GGCGTGGGC--------------------A-GG- TTG------AA--GT-----------GGAGGACC-------------------------- -------GCAGTGAAATGCTAATCTAACCCGGC-ATCCGCTGGTTCCTTCCGAAAACCAG TAGAG-CCAAACTCCAAAC---------------------------------------CC GTAAG-GGAGACAACCCAGCCCGT-GGTTAAGGTCCCCAATAAGTGA---------GACA GCTGGAAGGTTAGCTTAGAAGCAG---CTACCTTCAAAGAGTGCGTAACAGCTCACCAGT CGAGGGCCCCGAAAATTGAC-GGGGCTA-AGTAGGAAGGCGTTGCCGTACCGAGAACTGA CACAGGTGCC-------------------------------------TAAGGCAG-GGAA TTCGG-------CAAAT-TAGCT---C-CGTAACTTCGGGATAAGGCAG----------- ----TGACCAGGGG-GCTCTAACTGTCTA--ATACCAACATAG-GAGATTGCAAACCCGT AAGTACAA----TCTCTGAATCCTGCTCAGTGCAGGTACCTGAA-CAAC----------- --------GGGAAGAAGGGCCTGTAAACAGCGGGGGTAACT------ATGACCCTCTTAA GGTAGCGTAGTACCTTGTCGC--------------------------------TTAATTG GCGACTTGC----------------------------------------ATGAA------ ------------------------------------TGGATCAATGACTGTCCCTAAACC TCTAGGGG------------GAAGTGAAGACCCCGTGGA-GCTTTACTGCAGCCTGTC-- -----------------------GCTGTGTA---CAGAGTAGGTAGGAGGGGACCCCGAT AGGTGGGCA--GTTTGCC-TGGGGCG---------------------------------- --------------------------------------GGACGCCC-T--TGAAAAGATA TCAAGGGCGCGCAATGGTC----------------------------------------- ------------------------------------------------------------ ------GAAAGTCGGTTCTAGCGAACTGGTGGGGGCCAAAAAT--GACAG-----AAAAG TTACCCCGGGGATAATT-GAGTCGTTGCCGGCAAGAGTACATATCGACCCGGCAGCTTGC TACCTCGATGTCGGTTCTTTCCATCCTGGCC-GT-GCAGCATCGGCCAAG-GGTGAGGTT GTTCGCCTATTAAAGGAGA---TCGTGAGCTGGGTTTAGACCGTCGTGAGACA-GGTCGG TTACTATCTACTAGAGG-TGC-ACAAGGTCTGCGGGTATAGTACGAGAGGAACCAATAAG AGCTGAATGCATCTAAGCTCGAA--------------------- [24] 'Haloarc_ma' GUGGCAUAUAGCUCAGUAACACGUGGCCAAAC-UACCCUACAGAC--CGCGAUAACCUCG GGAAACUGAGGCCAAUAGCGGAUCGCUGUAGGAUGUGGCUGCGGCCGAUUAGGUAGAUGG UGGGGUAACGGCCCACCAUGCCGAUAAUCGGUACGGGUUGUGAGAGCAAGAACCUGGAGA CGGUAUCUGAGACAAGAUACCGGGCCCUACGGGGCGCAGCAGGCGCGAAACCUUUACACU GCACGACAGUGCGAUAGGGGGACUCCGAGUGUGAGAACAAGGACUGGGCAAGACCGGUGC CAGCCGCCGCGGUAAUAC-CGGCAGUCCGAGUGAUGGCCGAUAUUAUUGGGCCUAAAGC- GUCCGUAGCCGGC--GAC--------GGU-----GAG--GGACGAAA-GCUAGGGUCUCG AACCGG-AUUAGAUACCCGGGUAGUCC--UAGCUG-UAAACGAUGAGGGAAGCCG--AGA AGCC-------G--CCUGGGAAGUA-CGUC----UGCAAGGAUGAAACUUAAA-GGAAUU GGCG----GGGAGCACCACAA-CCGGAGGAGCCUGCGGUUUAAUUGGAC-UCAACG--CC GGACAUCU--ACCC---------------------------------------------- --------GACA-----AGA------GGAGGUGCAUGGCCGCCGUCAGC-UCGUACC-GU GAGGCGUCCUGUUA-AGUCAGGCAACGAGCGAGA-CCCGAGGAAGGAACGGGCAACGG-- -UAGGUCAGUAUGCCCC--------GAAUGGGGC-AAC-ACGCGGGCUACAAUGGACAGU GG-GAGUUCGGAUUGCGGGCUGAAA---CCCGCCCGCAUGAAGC-----------UGGAU UCGG---------------UAGUAAUCGG----CGGUGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCAAAG-CACCCGAGGGG--GGCUUAAGUCGUAACAAGGUAGCCGUAGAG GAAUCUGUGGCUGGAUCACCUCCUU-GGUGGAUUGCUCGGCUGAUGAAGGACGUGCGAUA AGCUGGGGAGCCGUUUCCG-AAUGAGAAUCGAACUGAAA-CAUCUCAGUAU-CGGGAGGA ACAGAAA--ACGCAA---GAUGUCGUUAGU-AACCGCGAGUGAACCAGAGUAGCAAGGCU AAACACAGACCGAUAGUGA-ACGU-AGUGUGAACG--A-ACGCUG-CAAAGUACCCUAGG GAGGCGAAUAGAGCAUGAAAUCUACGUUUUGAAAAACGAGCCAGGGAGUAGGGAAACCGA CGACCCGAAU--CCGGACGAUC-UA-CGCAUGGAC--------------------A-AG- AUG------AA--GU-----------GGAAGUCU-------------------------- -------GUUGUGAAAGGCCCAUCGAGUCCGGC-AACAGCUGGUUCCAAUCGAAAACCGG UAGAG-CCAAACUCCAAAC---------------------------------------UU AGGAG-GGGAACAACCCAGAGAUA-GGUUAAGGUCCCCAAUAAGUGA---------GACA GCCGGGAGGUGAGCUUAGAAGCAG---CUACCUCUAAGAAAAGCGUAACAGCUUACCGGC CGAGGGCGCCCAAAAU-GAUCGGGACUA-AGUAGAUUGGCGCUCCCGUACCGAGAACCGA CACAGGUGUC-------------------------------------CAAGGCAG-GGAA UUCGG-------CAAGU-UAGUC---C-CGUACCUUCGGAAGAAGGCAG----------- ----UGACUCGGAA-GCUCGGACUGUCUA--GUAACAACAUAG-GUGACCGCAAAUCCGC AAGUACGG----UCACUGAAUCCUGCCCAGUGCAGGUAUCUGAA-CAAG----------- --------AGGACGAAGGACCUGUCAACGGCGGGGGUAACU------AUGACCCUCUUAA GGUAGCGUAGUACCUUGCCGC--------------------------------AUCAGUA GCGGCUUGC----------------------------------------AUGAA------ ------------------------------------UGGAUUAACCACUGUCCCAACACA CCCAGGGG------------GAAGCGAAGACCCUAUGGA-GCUUUACUGCAGGCUGUC-- -----------------------GCUGUGUG---CAGCAUAGGUAGGAGUGGACACCGAU AGCCGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GUACGCGC-U--CGAAAAGAUA UCGAGCGCGCCCUAUGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCGUGGUCUAGCGAACCGAUGCGGGCAAUUGAU--GACAG-----AAAAG CUACCCUAGGGAUAACA-GAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGC UACCUCGAUGUCGGUUCCCUCCAUCCUGCCC-GU-GCAGAAGCGGGCAAG-GGUGAGGUU GUUCGCCUAUUAAAGGAGG---UCGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUCGG CUGCUAUCUACUGGGUG-UGUAAUGGUGUCUGACAAGAUAGUACGAGAGGAACUA-UAAG AGCUGAACGCAUCUAAGCUCGAA--------------------- [25] 'Natrono_ma' GUAGCAGAUAGCUCAGUAACACGUGGCCAAAC-UACCCUAUGGAU--CCAGACAACCUCG G-AAACUGAGGCUAAUCUGGAAUCGCCAUAGGAUGUGGC--CGGCCGAUUAGGUAGACGG UGGGGUAACGGCCCACCGUGCCGAUAAUCGGUACGGGUUGUGAGAGCAAGAGCCCGGAGA CGGUAUCUGAGACAAGAUACCGGGCCCUACGGGGCGCAGCAGGCGCGAAACCUUUACACU GCACGCCAGUGCGAUAAGGGGACUCCAAGUGCGAGAAUAAGUGCUGGGCAAGACCGGU-C CAGCCGCCGCGGUAA-AC-CGGCAGCACGAG--AUGACCGGUGUUAUUGGGCCUAAAGC- GUCCGUAGCUGGC--GAC--------GGU-----GAG--GGACGAAA-GCUCGGGUCACG AACCGG-AUUAGAUACCCGGGUAGUCC--GAGCUG-UAAACGAUGAGGGAAGCCG--UGA AGCC-------G--CCUGGGAAGUA-CGUC----CGCAAGGAUGAAACUUAAA-GGAAUU GGCG----GGGAGCACUACAA-CCGGAGGAGCCUGCGGUUUAAUUGGAC-UCAACG--CC GGACAUCU--ACCC---------------------------------------------- --------GACA-----AGA------GGAGGUGCAUGGCCGCCGUCAGC-UCGUACC-GU GAGGCGUCCUGUUA-AGUCAGGCAACGAGCGAGA-CCCGAGGAAGGAACGGGCAACGG-- -UAGGUCAGUAUGCCCC--------GAAUGGGGC-AAC-ACGCGGGCUACAAUGGACAGU GG-GACUUCGGAUUGAGGGCUGAAA---CUCGCCCUCAUGAAGC-----------UGGAU UCGG---------------UAGUAAUCGG----CGGUGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCAAAG-CACCCGAGGGG--GGCUUAAGUCGUAACAAGGUAGCCGUAGGG GAAUCUGCGGCUGGAUCACCUCCAG-GGUGGAUCGCUCGGCUGAAGACGGACGUGCGAUA AGCCAGGGACCCGUUUCCG-AAUGGGAAUCGAACUGAAA-CAUCUCAGUAU-CGGCAGGA AAAGAAA--ACGUAA---GAUGUCGUUAGU-ACUGGCGAAGGAACCAGAGUAUCAAGACU AAACACUGACCGAUAGCGA-ACGU-AGUGUGAACG--A-ACGCUG-AAAAGCACCCCAGG GAGGUGCAUAGGGCGUGAAAUCUACGUUUUGAAAAACGAACCAGGGAGUAGGGAAACCGA CGACCCGAAA--CUGGAUGAUC-UA-GACGUGGGC--------------------A-AG- GUG------AA--GU-----------GGAGGCCU-------------------------- -------GUUGUGAAAGGCCCAUCGAAUCCAGA-AACAGCUGGUUCCAACCGAAAACCGG UAGAG-CCCAACUCCGAAC---------------------------------------CU GUAAG-GGAGACAACCCAGAGCUG-GGUUAAGGUCCCAAAUAAGUGA---------GACA GCCGGGAGGUGAGCUUAGAAGCAG---CUACCUCUAAGAAAAGCGUAACAGCUUACCGGC CGAGGGCGCCCAAAAU-GAUCGGGGCUA-AGUAGGUUGGCGUUCCCGUACCGAGAUCCGA CACAGGUACC-------------------------------------CAAGGUAG-GGAA UUCGG-------CAAGU-UAGUC---C-CGUACGUUCGCAAUAAGGCAG----------- ----UGACUCGGGC-GCUCCGACUGUCUA--GUAACAACAUAG-GUGACCGCAAAUCCGC AAGUACGG----UCACUGAAUCCUGCCCAGUGCGGGUAUCUGAA-CAAG----------- --------GGGACGAAGGACCCGUUAACGGCGGGGGUAACU------AUGACCCUCUUAA GGUAGCGUAGUACCUUGCCGC--------------------------------UUCAGUA GCGGCUUGC----------------------------------------AUGAA------ ------------------------------------UGGAUCAACGACUGUCCCAACACC CCCAAGGG------------GAAGCGAAGACCCUAUAGA-GCUUUACUGCAGGCUGUC-- -----------------------ACUGUGUG---CAGCAUAGGUAGGAGGGGACACUGGU AGCCGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GUACGCGC-C--UGAAAAGAUA UCGGGCGCGCCCCAAGAUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCGUGGUCUAGCGAACCGAUGCGGCCAAUUGCU--GACAA-----AAAAG CUACCUUAGGGAUAACA-GAGUCGUCACCCGCAAGAGCACAUAUCGACCGGGUGGCUUGC UACCUCGAUGUCGGUUCCCUCCAUCCUGCCC-GU-GCAGAAGCGGGCAAG-GGUGAGGUU GUUCGCCUAUUAAAGGAGG---UCGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUCGG CUGCUAUCUAUUGGGGG-UGUUAUGGUUCCUGACGGGAUAGUACGAGAGGAACUA-UAAG AGCUGAACGCAUCUAAGCUCGAA--------------------- [26] 'Halofer_me' GUGGCGAAAAGCUCAGUAACACGUGGCCAAAC-UACCCUACAGAG--AACGAUAACCUCG GGAAACUGAGGCUAAUAGUUCAUCGCUGUAGGAUGUGGCUGCGGCCGAUUAGGUAGACGG UGGGGUAACGGCCCACCGUGCCAAUAAUCGGUACGGGUUGUGAGAACAAGAGCCCGGAGA CGGAAUCUGAGACAAGAUUCCGGGCCCUACGGGGCGCAGCAGGCGCGAAACCUUUACACU GCACGCAAGUGCGAUAAGGGGACCCCAAGUGCGAGAAUAAGAGCUGGGCAAGACCGGUGC CAGCCGCCGCGGUAAUAC-CGGCAGCUCAAGUGAUGACCGAUAUUAUUGGGCCUAAAGC- GUCCGUAGCCGGC--GAC--------GGU-----GAG--GGACGAAA-GCUAGGGUCUCG AACCGG-AUUAGAUACCCGGGUAGUCC--UAGCUG-UAAACGAUGAGGGAAGCCG--UGA AGCC-------G--CCUGGGAAGUA-CGUC----CGCAAGGAUGAAACUUAAA-GGAAUU GGCG----GGGAGCACUACAA-CCGGAGGAGCCUGCGGUUUAAUUGGAC-UCAACG--CC GGACAUCU--ACCC---------------------------------------------- --------GACU-----AGA------GGAGGUGCAUGGCCGCCGUCAGC-UCGUACC-GU GAGGCGUCCUGUUA-AGUCAGGCAACGAGCGAGA-CCCGAGGAAGGAACGGGCAACGG-- -UAGGUCAGUAUGCCCC--------GAAUGGGGC-UAC-ACGCGGGCUACAAUGGACAAU GG-GAGUUCGGAUUGAGGACUGAAA---CUCGUCCUCAUGAAGC-----------UGGAU UCGG---------------UAGUAAUCGG----CGGUGAAUACGUCCCUGCUCCUUGCAC ACACCGCCCGUCAAAG-CACCCGAGGGG--GGCUUAAGUCGUAACAAGGUAGCCGUAGGG GAAUCUGCGGCUGGAUCACCUCCUUAGGUGGAUAGCUCGGCCGAUGACGGACGUGCGAUA AGCCAGGGACCCGUCUCCG-AAUGGGAAUCGAAUUGAAA-CAUCUUAGUAG-GAACAGGA AAAGAAA--GCAAUC---GAUGUCGUUAGU-AACGGCGAGUGAACCAGAAUAGCAAGACU AAACACUGACCGAUAGCGA-ACGU-AGCGUGAGCG--A-ACGCUG-AAAAGCACCCCAGG GCGGUGCAUAGGGCUUGAAAUCUACGUUUUGAAAAACGAACCAUGGAGUAGGGAAACCGA CGACCCGAAA--CCAAGUGAUC-UA-CGCCGGAGC--------------------A-GG- GCG------AA--GU-----------GGAGGCCC-------------------------- -------GUUGUGAAAGGCCCAUCGAACUUGGC-AACAGCUGGUUCCAACCGAAAACCGG UAGAG-CCAAACUCCAAAC---------------------------------------UU GUGAG-GGAGACAACCCAGAGCCA-GGUUAAGGACCCAAAUAAGUGA---------AACA GCCGGGAGGUGAGCUUAGAAGCAG---CUACCUCUAAGAAUAGCGUAACAGCUUACCGGC CGAGGGCGUCGAAAAU-GAUCGGGACUA-AGUAGGUUGGCAUACUCGUACCGAGAUCCGA CACAGGUGCC-------------------------------------CAAGGUAG-GGAA UUCGG-------CAAGU-UAGUC---C-CGUAAGUUCGCGAUAAGGCAG----------- ----UGACUCGGAC-GCUCCGACUGUCUA--GUAACAACAUAG-GUGACCGCAAAUCCGC AAGUACGG----UCACUGAAUCCUGCCCAGUGCGGGUAUCUGAA-CAAU----------- --------GGGACGAAGGACCCGUCAACGGCGGGGGUAACU------AUGACCCUCUUAA GGUAGCGUAGUACCUUGCCGC--------------------------------UUCAGUA GCGGCUUGC----------------------------------------AUGAA------ ------------------------------------UGGAUCAACGACUGUCCCAACACC CCCAAGGG------------GAAGCGAAGACCCUAUAGA-GCUUUACUGCAGGCUGUC-- -----------------------GCUGUGUG---CAGCAUAGGUAGGAGCGGACACCGGU AGCCGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GUACGCGC-U--CGAAAAGAUA UCGAGCGCGCCCAAAGAUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCGUGGUCUAGCGAACCCAUGGGACCCGUAGAU--GACAG-----AAAAG CUACCUUAGGGAUAACA-GAGUCGUCACCCGCAAGAGCACAUAUCGACCGGGUGGCUUGC UACCUCGAUGUCGGUUCCCUCCAUCCUGCCU-GU-GCAGAAGCAGGCAAG-GGUGAGGUU GUUCGCCUAUUAAAGGAGG---UCGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUCGG CUGCUAUCUAUUGGGGG-UGCUAAGGAACUUGACGUGAUAGUACGAGAGGAACUA-UAAG AGCUGAAAGCAUCUAAGCUCGAA--------------------- [27] 'Thermop_ac' CCGGCGAACAGCUCAGUAACACGUGGAUAAUU-UACCCUCAGGCG--GGGCAUAACCUCG GGAAACUGAGGCUAAUUCCCCAUCACCUGAGGAUAAGUCUGCGGCCUAUCAGGUAGUAGG UGGUGUAAAGGACCACCUAGCCUAAGACGGGUACGGGCCCUGAAAGGGGGAGCCCGGAGA UGGACUCUGAGACAACAGUCCAGGCCCUACGGGGCGCAGCAGGCGCGAAAACUGUGCAAU GCGCGAAAGCGCGACACGGGGAGCCUGAGUGCCUUAAUAAGGGCUGGGCAAGACGGGUGC CAGCCGCCGCGGUAACAC-CCGCAGCUCGAGUGGUGAUCACUUUUAUUGAGUCUAAAGC- GUUCGUAACCGGC--GAC--------GGU-----GAG--GGACGAAG-GCUAGGGGAGCA AACCGG-AUUAGAUACCCGGGUAGUCC--UAGCUG-UAAACGCUGAGCGAAGGUG--UUA AGUC-------A--CUUGGGGAGUA-CGGC----CGCAAGGCUGAAACUUAAA-GGAAUU GGCG----GGGAGCACCGCAA-CGGGAGGAGCGUGCGGUUUAAUUGGAU-UCAACG--CC GGAAAACU--ACGC---------------------------------------------- --------GACC-----AGA------GGUGGUGCAUGGCCGUCGUCAGC-UCGUACC-GU AGGGCGUUCACUUA-AGUGUGAUAACGAGCAAGA-CCCGAGGAAGGAGGGGUCGACGG-- -CAGGUCAGUACGCCCC--------GAAUCGGGC-UAC-ACGCGCGCUACAAAGGACAAU GA-GAGUCAGGACUGAGGGCUGUAA---CUCGCCCUCACGAAUG-----------UGGAU UCCG---------------UAGUAAUCGA----CGGUGAAUAUGCCCCUGCUCCUUGCAC ACACCGCCCGUCAAAC-CAUCCGAGGGA--GGGUUAAGUCGUAACAAGGUAUCCGUAGGG GAACCUGCGGAUGGAUCACCU-----AGAGGAUGGCUUGGCCGAAGAAGGACGUGCGAUA AGCUGGGGAGGCGUCUCCG-AAUGGGACUUGAAUUGAAA-CAUCUUAGUAC-CCGGAGGA AAAGAAA--UCAAUU---GAUACCGUUAGU-AAAGGCGAUCGAACCAGAGUACCAACCUU AAAUACGGUCCGAUAGCGA-ACGU-ACCGUGAGGG--A-AAGCUG-AAAAGAAACCCAGG GUGGUGAAAAGAGCCUGAAACUUCCGUGUUGAAGAACGGGCCAGGGAGUAGCGAAAGCAA AGACCCGAAG--CCGGUCGAUC-UA-CACCUGAGU--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGUUAAAGGCCAAUCUAGGCCGGC-AAUAGCGGGUUCCCCCCGAUAACCGG UAGAG-CCAAACUCCGAAC---------------------------------------UU GUGAU-GGGAACAACCAAGACGAG-GGUUAAGGUCCCUAAUAAGUGA---------GACA GUGGGGAGGUAGGCUCAGAAGCAG---CCACCUUCAAAGAGUGCGUAACAGCUCACUCAC CGAGUGCCUAGAAGAUGGAA-GGGGCUA-AGUAGGGGGGCGUGCUCGUACCAAGAACCGA CACUGGUGCC-------------------------------------UAAGGCAG-GGAA AUCGG-------CAAAA-UAGCU---C-CGUAUCUUCGGUAUAAGGCAG----------- ----UGACGAAGGG-ACUCCGACUGUUUA--CCACAAACACAG-AUCGCUGCUAGUCCGU AAGUAUAG----CGGUUGAAACCUGCCCAGUGCUGGUACCUGAA-CAAG----------- --------GGGAAGAAGGGCCAGUAAACGGCGGGGGUAACU------AUGACCCUCUUAA GGUAGCGUAAUACCUAGCCGC--------------------------------UUAAUUG GCGGCUUGC----------------------------------------AUGAA------ -------------------------------------GGUUCAACGUCUGUCCCCGCUCU CCCACGUG------------AAAGCGAAGUCCCCGUGGA-GCUUUACUGCAGCCUGUA-- -----------------------GCUGUGCG---UAGUGUAGGAAGGAGCGGACAACUAU UGGUGGGCA--GUUUGGG-UGGGGCG---------------------------------- --------------------------------------CCACGCCC-C--UAACAACGUA ACAGGGGCCCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCAGGGUUUAGCGAACCAGUGGGGGCGGGUGAU--AAGAG-----AGAAG UUACCCCAGGGAUAACU-GAGUCGUCCUCGGCAAGAGUACACAUCGACCCGAGGGUUUGC UACUUCGAUGUCGUCUGUUCCUAUCCUGGUG-CU-GCAUAAGGUGCCAAG-GGUGGGGCU GUUCGCCCAUUAAAAGGGA---UCCUGAGAUGGGUUCACUACGUCGCGAGACA-GUAGGG UUGCUUCUCCGUGGGAG-UGC-UCGAUGUCUGAGGGGAUAGUACGAGAGGAACAAAUAAG AGCUGAAAGCAUCUAAGCUCGAA--------------------- [28] 'Mycopla_ge' GAGGCGAACGGGUGAGUAACACGUAUCCAAUC-UACCUUAUAAUG--GGGGAUAACUAGU UGAAAAACUAGCUAAUACCGCAUCGUUAUUUGAUGAGGGUGCGCCAUAUCAGCUAGUUGG UAGGGUAAUGGCCUACCAAGGCAAUGACGUGUAGCUAUGCUGAGAAGUAGAAUAGCCACA AUGGGACUGAGACACGGCCCAUACUCCUACGGGAGGCAGCAGUAGGGAAUUUUUCACAAU GAGCGAAAGCUUGAUGGAGCAAUGCCGCGUGAACGAAUAAGUGACGACUAACUAUG-UGC CAGCAGUCGCGGUAAUAC-AUAGGUCGCAAGCGUUAUCCGGAUUUAUUGGGCGUAAAGC- AAGCGCAGGCGGU--GAC--------GCU-----UAG--GCUUGAAA-GUGUGGGGAGCA AAUAGG-AUUAGAUACCCUAGUAGUCC--ACACCG-UAAACGAUAAGUUAACACA--UUA AGUC-------G--CCUGGGUAGUA-CAUU----CGCAAGAAUGAAACUCAAACGGAAUU GACG----GGGCCCGC-ACAA-GUGGUGGAGCAUGUUGCUUAAUUCGAC-GGUACA--CG AAAAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGGUGCAUGGUUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGAAGGGAUGACGU-- -CAAAUCAUCAUGCCCC--------UUAUGGGGC-UGC-AAACGUGCUACAAUGGACAAA CA-GAGUUCGGAUUGAGGGCUGCAA---UUCGUCCUCAUGAAGC-----------UGGAA UCAC---------------UAGUAAUCGG----CGGUGAAUACGUUCUCGGGUCUUGUAC ACACCGCCCGUCAAAC-UAUGAAAGUUG--GAGUUAAGUCGUAACAAGGUACCCCUACGA GAACGUGGGGGUGGAUCACCUC----GGUGGAUGCCUUGGGCGAUGAAGGACGUGCGAUA AGCCGGGGAGGUGUGUCCG-AAUGGAGCAAGAAGUGAAA-CAUCUCAGUAA-CCACAGGA AAAGAAA--ACGAAU---GAUUCCGUGUGU-AGUGGCGAGCGAACCUGAGUAGCAAGCCU AAAUACUGACCGAUAGCGA-AAGU-ACCGUGAGGG--A-AAGGUG-AAAAGAACCCAAUG GGAGUGAAUAGAUUCUGAAACCUGCGUUUUGAAGUAUGAGCCGGCGAGUAGCGAAAGCGA AGACCCGAAA--CGGGUUGAGC-UA-GUCAUGAGC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGUGAAAUUCCAAUCGAAAUCCGU-GAUAGCUGGUUCUCGUCGAAAGCGGG UAAAG-CUAAACUCUGAAU---------------------------------------GC AAGAG-GGGAAGAGCCCAGAUCAUUAAAUAAGGUCCCCAAUAAGUGA---------AACA GCAAGGAUGUUGGCUUAGAAGCAG---CCACGUUUAAAGAGUGCGUAACAGCUCACUUGU CGAGUGCGCCGAAGAUGUAACGGGGCUA-AGUAGACGAGCGUUGCCGUACCGAGAACGAA CACACGUAGC-------------------------------------UAAGGUAA-GGAA CUCUG-------CAAAU-UAACC---C-CGUAAGUUAGCGAGAAGGCAG----------- ----UGAAGAACGA-GGGGGGACUGUUUA--ACUAAAACACAA-CUCUAUGCCAAACCGU AAGUAUAU----GGGGUGACACCUGCCCAGUGCUGGAAGGUUAAGCUUU----------- --------UAACUGAAGCCCCAGUGAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUAGUCGG--------------------------------GUAAAUU CCGUCCCGC----------------------------------------UUGAA------ ------------------------------------UGGUGUAACCACUGUCUCGGCAGG CGCAACGG------------GACGGAAAGACCCCGUGAA-GCUUUACUGUAGCUUAAU-- -----------------------AUUGUGUA---GAGAAUAGGUAGGAGCAGACAGUGUU AGGUGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CUAAAAGGUA ACGGAGGCGCACAAAGGUA----------------------------------------- ------------------------------------------------------------ ------GAAAUCAGGUCAUAGUGAUCCAAUGGCCAUCGCUCAA--CGGAU-----AAAAG CUACUCCGGGGAUAACA-GGCUGAUACUGCCCAAGAGUUCAUAUCGACGGCAGUGUUUGG CACCUCGAUGUCGACUCAUCUCAUCCUCGAG-CU-GAAGCAGGUUCGAAG-GGUUCGGCU GUUCGCCGAUUAAAGAGAU---ACGUGAGUUGGGUUCAAACCGUCGUGAGACA-GGUUGG UCCCUAUCUAUUGUGCC-CAC-AGGAAGAUUGAAGAGCUAGUACGAGAGGACCGG----- -------------------------------------------- [29] 'Ureapla_ur' GUGGUGAACGGGUGAGUAACACGUAUCCAAUC-UACCCUUAAGUU--GGGGAUAACUAGU CGAAAGAUUAGCUAAUACCGAAUCGCUUUUGGAUGAGGGUGCGACGUAUCAGAUAGUUGG UGAGGUAAUGGCUCACCAAGUCAAUGACGCGUAGCUGUACUGAGAGGUAGAACAGCCACA AUGGGACUGAGACACGGCCCAUACUCCUACGGGAGGCAGCAGUAGGGAAUUUUUCACAAU GGGCGCAAGCCUUAUGAAGCAAUGCCGCGUGAACGAAUAAGUAUCGGCUAACUAUG-UGC CAGCAGCCGCGGUAAUAC-AUAGGAUGCAAGCGUUAUCCGGAUUUACUGGGCGUAAAAC- GAGCGCAGGCGGU--GAC--------GCU-----UAG--GCUCGAAA-GUGUGGGGAGCA AAUAGG-AUUAGAUACCCUAGUAGUCC--ACACCG-UAAACGAUCAGCUAACGCA--UUA AAGU-------G--CCUGGGUAGUA-CAUU----CGCAAGAAUGAAACUCAAACGGAAUU GACG----GGGCCCGC-ACAA-GUGGUGGAGCAUGUUGCUUAAUUUGAC-AAUACA--CG UAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGGUGCAUGGUUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCC-GCAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAAUCAUCAUGCCCC--------UUAUAGGGC-UGC-AAACGUGCUACAAUGGACAAA CU-GAGUUCGGAUAGAGGGCUGCAA---UUCGUCCUCUUGAAGU-----------UGGAA UCAC---------------UAGUAAUCGG----CGGUGAAUACGUUCUCGGGUCUUGUAC ACACCGCCCGUCAAAC-UAUGGGAGCUG--GAGUUAAGUCGUAACAAGGUAUCCCUACGA GAACGUGGGGAUGGAUCACCUCCUUUGGUGAAUGCCUUGGGCGAUGAAGGACGUGCGAUA AGCCGGGUAGCUGUCUCCG-AAUGAGGAAAGAAGUGAAA-CAUCUCAGUAA-CCAGAGGA AAAGAAA--ACGAA----GAUUCCCUGUGU-AGCGGCGAGCGAACCUGAGUAGGAAGCCU AAAUACUCACCGAUAGAGC-A-GU-ACCGUGAGGG--A-ACGGUG-AAAAGAACCCAAUG GGAGUGAAUAGAACCUGAAACCUGCCUUUUGAAGUAUGAGCCAGCGAGUAGGGAAACCGA AGACGCGAAA--CGGGGUGAUC-UA-UCCAUGGGC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGUGAAAUUCCAAUCGAACUCCGU-GAUAGCUCGUUCUCGUCGAAAGCGGG UAAAG-CCAAACUCUGAAU---------------------------------------AC GCGAG-GGAAACAGCCCAGAUCAUUAACUAAGGUCCCUAAUAAGUGA---------AACA GCAAGGAUGUUGGCUUAGAAGCAG---CCACGUUUAAAGAGUGCGUAACAGCUCACUUGU CGAGUGCGCGGAAGAUGUAACGGGGCUA-AGUAGACGAGUGUUGUCGUACCGAGAACGAA CACACGUGGC-------------------------------------UAAGGUAA-GGAA CUCUG-------CAAAU-UAACC---C-CGUACGUUAGCAAUAAGGCAG----------- ----UGAAUAGCGA-GGGGGGACUGUUUA--ACAAAAACACAG-CUCUAUGCUAAGUCGU AAGUAUAU----GGGGUGACACCUGCCCAAUGCUGUAAGGUUAAGCUUU----------- --------UAACUGAAGCCCCAGUGAAUGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAAUU CCGUCCCGC----------------------------------------UUGAA------ ------------------------------------UGGUGUAACCACUGUCUCAACUGG CGUGAUUG------------GACGGAAAGACCCCAUGAA-GCUUUACUGUAGCUUAAU-- -----------------------AUUGUGUA---GAGCAUAGGUAGGAGAGGACAGUGUU AGGUGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CCAAAAGGUA ACGGAGGCGCGCAACGGUG----------------------------------------- ------------------------------------------------------------ ------GAAACUAGGUCAUAGUGAUCCAAUGGCCAUCGCUCAA--CGGAU-----AAAAG CUACUCUGGGGAUAACA-GGCUGAUAGUGCCCAAGAGUUCAUAUCGACGGCACUGUUUGG CACCUCGAUGUCGACUCAUCUCAUCCUGGAG-CU-GAAGCAGGUUCCAAG-GGUUCGGCU GUUCGCCGAUUAAAGAGAU---ACGUGAGUUGGGUUCAAACCGUCGUGAGACA-GGUUGG UCCCUAUCUGUCAUGCC-CGU-AGGAAGAUUGAGAAGAUAGUACGAGAGGACCGGAGAAA CGCUGAAAGCAUCUAAGUGUGAA--------------------- [30] 'Borreli_bu' GUGGCGAACGGGUGAGUAACGCGUGGAUGAUC-UACCUAUGAGAU--GGGGAUAACUAUU AGAAAUAGUAGCUAAUACCGAAUCGCUUGUAGAUGAGUCUGCGUCUUAUUAGCUAGUUGG UAGGGUAAAUGCCUACCAAGGCAAUGAUAAGUAACCGGCCUGAGAGGGUGAACGGUCACA CUGGAACUGAGAUACGGUCCAGACUCCUACGGGAGGCAGCAGCUAAGAAUCUNCCNCAAU GGGCGAAAGCCUGACGGAGCGACACUGCGUGAAUGAAUAAGCCCCGGCUAAUUACG-UGC CAGCAGCCGCGGUAAUAC-GUAAGGGGCGAGCGUUGUUCGGGAUUAUUGGGCGUAAAGG- GUGAGUAGGCGGU--GAC--------GCU-----GAG--UCACGAAA-GCGUAGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCU--ACGCUG-UAAACGAUGAGCUAACGUG--UUA AGCC-------G--CCUGGGGAGUA-UGCU----CGCAAGAGUGAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAU-GAUACG--CG AGGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGUUGUCGUCAGC-UCGUGCU-GU GAGGUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGAGGAUGACGU-- -CAAAUCGUCAUGGCCC--------UUAUGGGGC-UAC-ACACGUGCUACAAUGGACAAA GC-GAGUCCGGAUUGAAGUCUGAAA---CUCGACUUCAUGAAGU-----------UGGAA UCGC---------------UAGUAAUCGA----CGGUGAAUACGUUCUCGAGCCUUGUAC ACACCGCCCGUCACAC-CACCCGAGGGG--GGGUGAAGUCGUAACAAGGUAGCCGUACUG GAAAG---------------------GGUGAAUGCCUAGGGCGAAGAAGGUCGUGCGAAA AGCGGGGGAGAAGUUACCG-AAUGGAGUAAGAAGUGAAC-CAUCUAAGUAC-CCUGAGGA AAAGAAA--UCAA-A---GAUUCCCUUAGU-AGUGGCGAGCGAACCUGAGUAGGAAGGCU AAAUACUUACCGAUAGAGA-A-GU-ACCGUGAGGG--A-AAGGUG-AAAAGAACCCCAGG GGAGUGAAUAGAAC-UGAAACCUGCCUUUUGCAUAAUGAACCUGCGAGUAGCGAAAGCGA AGACCCGAAG--CCGAGUGAUC-UA-UUUAUGGCC--------------------A-GG- CUG------AA--GU-----------GGAGGGCC-------------------------- -------GAAGUGAAAGGCUAAACAAACUCGGA-GAUAGCUGGUUCUCCCCGAAAGCCGG UAGAG-CUAAACUCCGAAU---------------------------------------GC GAGAG-GGAAACAACCCAGACCAACAGCUAAGGUCUCAAAUAAGUGA---------AACA GCCAGGAGGUUGGCUUAGAAGCAG---CCACCUUUAAAGAGUGCGUAAUAGCUCACUGGU CGAGAGCGCCGAUAAUGUAACGGGGCUA-AGUAGGGGAGCGUUCCCGUACCGCAAACCGA CACAGGUAGC-------------------------------------UAAGGCAA-GGAA CUCUG-------CAAAA-UACGU---A-CGUAACUUCGGGAUAAGUCAU----------- ----AAAAAUGGUC-CAAACGACUGUUUA--CCAAAAACACAG-GUCUCUGCAAAUCUGU AAAUAUAG----GGACUGACACCUGCCCGGUGCUGGAAGGUUAAGCAUU----------- --------GAAUUUAAGCCCCAGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCCGC----------------------------------------ACGAA------ ------------------------------------UGGUGUAACGACUGUCUCAACACU UGUGGUUA------------GACGGAAAGACCCCGUGAA-CCUUUACUAUAGCUUGGU-- -----------------------AUUGUGUG---UAGGAUAGGUGGGAGAGGAGAGUGCC AGGUGGGUA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CUAAAGAGUA ACGGAGGUGCGCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUAGGUCUUAGUGAUCUAAGCGCCGUCACUUAA--CGAAU-----AAAAG GUACUCCGGGGAUAACA-GGCUUAUCCUUCCCAAGAGUUCACAUCGACGGAAGGGUUUGG CACCUCGAUGUCGGCUCAUCGCAUCCUAGGG-CU-GGAGCAGGUCCUAAG-GGUAUGGCU GUUCGCCAUUUAAAGCGGU---ACGCGAGCUGGGUUCAGAACGUCGUGAGACA-GUUUGG UCCCUAUCUGCCACAAG-CGU-UGGAUAUUUGAGAGGAUAGUACGAGAGGACCGAAUAAC CGCUGAAAGCAUCUAAGUGGGAA--------------------- [31] 'Trepone_pa' GUGGCGGACUGGUGAGUAACGCGUGGGUAAUC-UGCCUUUGAGAU--GGGGAUAGCCUCU AGAAAUAGGGGGUAAUACCGAAUCGCUCAGAGAUGAGCCUGCGACCCAUUAGCUUGUUGG UGGGGUAAUGGCCUACCAAGGCGUCGAUGGGUAUCCGACCUGAGAGGGUGACCGGACACA CUGGGACUGAGAUACGGCCCAGACUCCUACGGGAGGCAGCAGCUAAGAAUAUUCCGCAAU GGGCGAAAGCCUGACGGAGCGACACCGCGUGGAUGAAUAAGCCCCGGCUAAUUACG-UGC CAGCAGCCGCGGUAACAC-GUAAGGGGCGAGCGUUGUUCGGAAUUAUUGGGCGUAAAGG- GCAUGCAGGCGGU--GAC--------GCU-----GAG--GUGCGAAG-GUGUGGGGAGCG AACAGG-AUUAGAUACCCUGGUAGUCC--ACACAG-UAAACGAUGCGCGAACGCA--UUA AGCC-------G--CCUGGGGAGUA-UGCU----CGCAAGAGUGAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAU-GAUACG--CG AGGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGCC-GU GAGGUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAGUCAUCAUGGCCC--------UUAUGGGGC-UAC-ACACGUGCUACAAUGGACAGA GC-GAGUCCGGAUUGAAGUCUGAAA---CUCGACUUCAUGAAGU-----------UGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUGUGUUCCCGGGCCUUGUAC ACACCGCCCGUCACAC-CAUCCGAGGGA--GGGUGAAGUCGUAACAAGGUAGCCGUACCG GAAGGUGCGGCUGGAUCACCUCCUUUGGUGGAUGUCUUGGGCGAUGAAGGUCGUGCGAAA AGCCGGGGAGGAGUGACCG-AAUGGGGUAAGAACUGAAC-CAUCUAAGUAA-CUUG-GGA AAAGAAA--UCAAGA---GAUUCCGAAAGU-AGUGGCGAGCGAACCUGAGUACGAAGGCU AAAUACUUACCGAUAGUGG-ACGU-ACCGUGAGGG--A-AAGAUG-AAAAGAACCCCAGG GGAGUGAAUAGAACCUGAAACCUGCCUUUUGUAGAAUGAGCCUGCGAGUAGGGAAACCGA AGACCCGAAG--CCGGGUGAUC-UA-GUUAUGAGC--------------------A-GG- UUG------AA--AU-----------GGAGGACC-------------------------- -------GAAGUGAAAGGCUAAACAAACCUGGA-GAUAGCUGGUUCUCCCCGAAAGCCGG UAAAG-CCAAACUCUGAAU---------------------------------------GC GAGAG-GGAAACAGCCCAGACCGUCAGCUAAGGUCCCGAAUGAGUGG---------GACA GCCAGGAGGUUGGCUUAGAAGCAG---CCACCUUGAAAGAGUGCGUAAUAGCUCACUGGU CGAGUGCGCAGAUAAUGUAUCGGGGCUA-AGUAGGGGAGCAUUCCCGUACCGCAAACCGA CACAGGUAGC-------------------------------------UAAGGCAA-GGAA CUCGG-------CAAAA-UACAC---A-CGUAACCUCGGGAGAAGUCAG----------- ----AAAGCAGGUC-CAGGCGACUGUUUA--UCAAAAACAUAG-CCAUCUGCAAAUCAGU AAUUAUAG----GUGGUGACACCUGCCCGGUGCUGGAAGGUUAAGCUUU----------- --------GAAUUGAAGCCCCAGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCCGC----------------------------------------ACGAA------ ------------------------------------UGGUGUAACGACUGUCUCGACACC CAUAGUUA------------GACGGAAAGACCCCGUGAA-CCUUCACCGUAGCUUACU-- -----------------------AUUGUGUG---UAGUAUAGGUGGGAGAGGACCGUGGU AGGUGGGCG--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CUAAAAGGUA ACGGAGGUGCGCGAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUAGGUCUUAGUGAUCUAAGCGCCGUCACUUAA--CGGAU-----AAAAG GUACUCCGGGGAUAACA-GGCUGAUUUUCCCCAAGAGUUCACAUCGACGGGAAAGUUUGG CACCUCGAUGUCGGCUCAUCGCAUCCUGGGG-CU-GAAGCAGGUCCCAAG-GGUUUGGCU GUUCGCCAAUUAAAGCGGU---ACGUGAGCUGGGUUCAGAACGUCGCGAGACA-GUUCGG UCCCUAUCUGCUAUGGG-CGU-UGGAUAUGUGAGAGGAUAGUACGAGAGGACCGAAUAAC CGCUGAAGGCAUCUAAGUGGGAA--------------------- [32] 'Chlamyd_mu' GUGGCGGAAGGGUUAGUAAUGCAUAGAUAAUU-UGUCCUUAACUU--GGGAAUAACGGUU GGAAACGGCCGCUAAUACCGAAUCGGUUAAGGGAGAGUCUAUGUGAUAUCAGCUAGUUGG UGGGGUAAAGGCCUACCAAGGCUAUGACGUCUAGGCGGAUUGAGAGAUUGGCCGCCAACA CUGGGACUGAGACACUGCCCAGACUCCUACGGGAGGCUGCAGUCGAGAAUCUUUCGCAAU GGACGGAAGUCUGACGAAGCGACGCCGCGUGUGUGAAGAAGCACCGGCUAACUCCG-UGC CAGCAGCUGCGGUAAUAC-GGAGGGUGCUAGCGUUAAUCGGAUUUAUUGGGCGUAAAGG- GCGUGUAGGCGGU--GAC--------GCU-----AAG--GCGCGAAA-GCAAGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--UUGCCG-UAAACGAUGAGCUAACGCG--UUA AGCC-------G--CCUGAGGAGUA-CACU----CGCAAGGGUGAAACUCAAA-AGAAUU GACG----GGGCCCGC-ACAA-GCAGUGGAGCAUGUGGUUUAAUUCGAU-GCAACG--CG AAGGACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGCC-GU GAGGUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGCGAGGAUGACGU-- -CAAGUCAGCAUGGCCC--------UUAUGGGGC-GAC-ACACGUGCUACAAUGGACAGA AG-GAGUUCGGAUUGUAGUCUGCAA---CUCGACUACAUGAAGU-----------CGGAA UUGC---------------UAGUAAUGGG----CCGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACAU-CAUGGGAGCUG--GGAUGAAGUCGUAACAAGGUAGCCCUACCG GAAGGUGGGGCUGGAUCACCUCCUUUGGUGGAUGCCUUGGGCGAUGAAGGACGCGCGAAA AGCCGGCGAGCUGUGUCCG-AAUGGGGAAAGAACUGAAA-CAUCUUAGUAA-GCAGAGGA AAAGAAA--UCGA-A---GAUUCCCUGUGU-AGCGGCGAGCGAACCUGAGUAGGAAGGCU AAAUACUGACCGAUAGUGA-ACGU-ACUGUGAAGG--A-AAGGCG-AAAAGAACCCUAAG GGAGUGAAUAGAACCUGAAACCUGCCUUUUGCAUGAUGAGCCAGGGAGUAGCGAAAGCGA AGACACGAAA--CCAAGUGAGC-UA-UUUAUGACC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGUGAAAGGCCAAUCAAACUUGGA-GAUAUCUUGUUCUCUCCGAAAGCCGG UAGAG-CCAAACUCCGAAU---------------------------------------AC GAGAG-GGGAACAGCCCAGACCGCCGAUUAAGGUCCCUAAUAAGUGA---------GACA GUUGGAAUGUUGGCUUAGAGGCAG---CAACAUUUAAAGAGUGCGUAACAGCUCACCAAU CGAGUGCGCCGAUAAUA-AACGGGGCUA-AGUAGGAGAGCGUAGCCGUACCA-AAACCGA CACAGGUGGC-------------------------------------UAAGGCAA-GGAA CUCGG-------CAAAU-UAUCC---C-CGUAACUUCGGAAUAAGGCAG----------- ----AGAAAUGGCC-CAGGCGACUGUUUA--GCAAAAACACAG-CACUAUGCAAACCUCU AAGUAUAU----GGUGUGACGCCUGCCCAAUGCCAAAAGGUUAAGCAUU----------- --------GAACCUAAGCCCUGGUGAAUGGCCGCCGUAACU------AUAACGGUGCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------ACGAA------ ------------------------------------UGGUGUAACGACUGUCUCAACACC CGCGAAAG------------GACGAAAAGACCCCGUGAA-CCUUUACUGUACUUUGGU-- -----------------------AUUGUGUG---UAGGAUAGCCAGGAGAGGACAUUGCC AGACGGGCA--GUUUUAC-UGGGGCG---------------------------------- --------------------------------------GU-AUCCU-C--CUAAAAAGUA ACGGAGGAGCCCAAAGCUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUCGGGCUUAGUGAUCCAAUCGCCGUCGCUUAA--CGGAU-----AAAAG GUACUCCGGGGAUAACA-GGCUGAUCGCCACCAAGAGUUCAUAUCGACGUGGCGGUUUGG CACCUCGAUGUCGGCUCAUCGCAUCCUGGGG-CU-GGAGAAGGUCCCAAG-GGUUUGGCU GUUCGCCAAUUAAAGCGGU---ACGCGAGCUGGGUUCAAAACGUCGUGAGACA-GUUUGG UCUCUAUCCUUCGUGGG-CGC-AGGAUACUUGAGAGGAUAGUACGAGAGGACCGGAUAAG CAUUGAAAGCAUCUAAAUGCCAA--------------------- [33] 'Chlamyd_tr' GUGGCGGAAGGGUUAGUAAUGCAUAGAUAAUU-UGUCCUUAACUU--GGGAAUAACGGUU GGAAACGGCCGCUAAUACCGAAUCGGUUAAGGGAGAGUCUAUGUGAUAUCAGCUAGUUGG UGGGGUAAAGGCCUACCAAGGCUAUGACGUCUAGGCGGAUUGAGAGAUUGGCCGCCAACA CUGGGACUGAGACACUGCCCAGACUCCUACGGGAGGCUGCAGUCGAGAAUCUUUCGCAAU GGACGGAAGUCUGACGAAGCGACGCCGCGUGUGUGAAGAAGCACCGGCUAACUCCG-UGC CAGCAGCUGCGGUAAUAC-GGAGGGUGCUAGCGUUAAUCGGAUUUAUUGGGCGUAAAGG- GCGUGUAGGCGGU--GAC--------GCU-----AAG--GCGCGAAA-GCAAGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--UUGCCG-UAAACGAUGAGCUAACGCG--UUA AGCC-------G--CCUGAGGAGUA-CACU----CGCAAGGGUGAAACUCAAA-AGAAUU GACG----GGGCCCGC-ACAA-GCAGUGGAGCAUGUGGUUUAAUUCGAU-GCAACG--CG AAGGACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGCC-GU GAGGUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGCGAGGAUGACGU-- -CAAGUCAGCAUGGCCC--------UUAUGGGGC-GAC-ACACGUGCUACAAUGGACAGA AG-GAGUUCGGAUUGUAGUCUGCAA---CUCGACUACAUGAAGU-----------CGGAA UUGC---------------UAGUAAUGGG----CCGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACAU-CAUGGGAGCUA--GGAUGAAGUCGUAACAAGGUAGCCCUACCG GAAGGUGGGGCUGGAUCACCUCCUUUGGUGGAUGCCUUGGGCGAAGAAGGACGCGCGAAA AGCCGGCGAGCUGUAUCCG-AAUGGGGAAAGAACUGAAA-CAUCUUAGUAG-GCAGAGGA AAAGAAA--UCGA-A---GAUUCCCUGUGU-AGCGGCGAGCGAACCUGAGUAGGAAGGCU AAAUACUGACCGAUAGUGA-ACGU-ACUGUGAAGG--A-AAGGCG-AAAAGAACCCUAAG GGAGUGAAUAGAACCUGAAACCUGCCUUUUGCAUGAUGAGCCAGGGAGUAGCGAAAGCGA AGACACGAAA--CCAAGUGAGC-UA-UUUAUGACC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGUGAAAGGCCAAUCAAACUUGGA-GAUAUCUUGUUCUCUCCGAAAGCCGG UAGAG-CCAAACUCCGAAU---------------------------------------AC GAGAG-GGGAACAGCCCAGACCGCCGAUUAAGGUCCCUAAUAAGUGA---------GACA GUUGGAAUGUUGGCUUAGAGGCAG---CAACAUUUAAAGAGUGCGUAACAGCUCACCAAU CGAGUGCGCCGAUAAUA-AACGGGACUA-AGUAGGAGAGCGUAGCCGUACCA-AAACCGA CACAGGUGGC-------------------------------------UAAGGCAA-GGAA CUCGG-------CAAAU-UAUCC---C-CGUAACUUCGGAAUAAGGCAG----------- ----AGAAAUGGCC-CAGGCGACUGUUUA--GCAAAAACACAG-CACUAUGCAAACCUCU AAGUAUAU----GGUGUGACGCCUGCCCAAUGCCAAAAGGUUAAGCAUU----------- --------GAACCUAAGCCCUGGUGAAUGGCCGCCGUAACU------AUAACGGUGCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------ACGAA------ ------------------------------------UGGUGUAACGACUGUCUCAACACC CGCGAAAG------------GACGAAAAGACCCCGUGAA-CCUUUACUGUACUUUGGU-- -----------------------AUUGUGUG---UAGGAUAGCCAGGAGAGGACAUUGCC AGACGGGCA--GUUUUAC-UGGGGCG---------------------------------- --------------------------------------GU-AUCCU-C--CUAAAAAGUA ACGGAGGAGCCCAAAGCUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUCGGGCUUAGUGAUCCAAUCGCCGUCGCUUAA--CGGAU-----AAAAG GUACUCCGGGGAUAACA-GGCUGAUCGCCACCAAGAGUUCAUAUCGACGUGGCGGUUUGG CACCUCGAUGUCGGCUCAUCGCAUCCUGGGG-CU-GGAGAAGGUCCCAAG-GGUUUGGCU GUUCGCCAAUUAAAGCGGU---ACGCGAGCUGGGUUCAAAACGUCGUGAGACA-GUUUGG UCUCUAUCCUUCGUGGG-CGC-AGGAUACUUGAGAGGAUAGUACGAGAGGACCGGAUAAG CAUUGAAAGCAUCUAAAUGCCAA--------------------- [34] 'Chlorob_li' UUGGCGCAAGGGUGAGUAAGGCAUAGGUAAUC-UGCCCUUUGGAC--UGGCAUAACCCCG AGAAAUCGGGGACAAUACCAGAUCGCCAAAGGAUGAGCCUAUGUUCCAUCAGGUAGUUGG UAGGGUAACGGCCUACCAAGCCAACGACGGAUAGCUGGUCUGAGAGGAUGAUCAGCCACA UUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGAGGAAUAUUGCGCAAU GGGCGAAAGCCUGACGCAGCAACGCCGCGUGGAUGAAUAAGCCACGGCUAACUCUG-UGC CAGCAGCCGCGGUGAUAC-AGGGGUGGCAAGCGUUGUCCGGAUUUACUGGGUGUAAAGG- GUGCGCAGGCGGU--GAC--------GCU-----CAG--GCACGAAA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCG-UAAACGAUGAGCUAACGCA--UUA AGCC-------A--CCUGGGAAGUA-CGCC----CGCAAGGGUGAAACUCAAA-GGAAUU GACG----NNNCCNGC-ACAA-GCGGUGGAUCAUGUGGUUUAAUUCGAU-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GAAA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGANGGGAUGACGU-- -CAAGUCCUCAUGGCCC--------UUACGGGGC-CAC-ACACGUGAUACAAUGGACAGA GG-GAGUCCGGAUCGGAGUCUGCAA---CUCGACUCCGUGAAGU-----------UGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUGUGUUCCCGGGCCUUGUAC ACACCGCCCGUCAAGU-CAUGGAAGCUG--GGACUAAGNNGUAACAAGGUACCGGAAGGA UCACCUCCUUU---------------GGUGGAUGCCUUGGGCGACGAAGGACGUGCGAAA AGCCGGGGAGGCGUCUCCG-AAUGGGGCAAGAAGUGAAA-CAUCUCAGUAC-CUGGAGGA AAAGAAA--ACAAAA---GAUUUCCUGAGU-AGCGGCGAGCGAACCUGAGUAGCAAGGCU AAAUACUGACCGAUAGUGA-ACGU-ACCGUAAGGG--A-AAGGUG-AAAAGUACCCUAAG GGAGUGAAUAGUACCUGAAACCUGCCUNUUGCAUAAUGAGCCUACGAGUAGCGAAAGCGA AGACGCGAAA--CCAAGUGAUC-UA-UCCUUGAUC--------------------A-GG- AUG------AA--GU-----------GGAGGUCC-------------------------- -------GAAGUGAAAGGCCAAUCAAACUUGGU-NAUAGCUCGUACUCCCCNAAAGCCGG UAGAG-CUGAACUCCGAAU---------------------------------------GC GAGAG-GGAAACAACCCAGAACCACAGCUAAGGCCCCNNAUNAGUGA---------GACA GCUAGGAUGUUGGCUUAGAAGCAG---CCACAUUUAAAGAGUGCGUAAUAGCUCACUAGU CAAGUGCGUCGAUAAUA-CCCGGGACUA-AGUAGGGGAGCAUUCCCGUACCGUAAACCGA CACAGGUAGC-------------------------------------UAAGGUAA-GGAA CUCGG-------CAAAA-UAGCC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGAAAUGGGU-CAAGCGACUGUUUA--ACAAAAACACAU-CUCUCUGCCAAGACGU AAGUAUAG----GGAGUGACACCUGCCCGGUGCUGGAAGGUUAAGCAGU----------- --------GAACCNAAGCCCCAGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------ACGAA------ ------------------------------------UGGUGUAACGACUGUCUCGGCACU CGCAUCUG------------GACGGAAAGACCCUAUGCA-CCUUUACUAUAACCUGGC-- -----------------------AUUGUGUG---UAGAAUAGGUGGGAGAGGACCAUGUC AGGCGGGUA--GUUUGAC-UGGNNNN---------------------------------- --------------------------------------GU-CGCCU-C--CUAAAAAGUA ACGGAGGCUUACAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUUGGUCAUAGUGAUCCAAGGGCCAUCGCUCAU--AGGAU-----AAAAG GUACGCUAGGGAUAACA-GGCUGAUCCCCGCCGAGAGUUCAUAUCGACGUGGGNNUUUGG CACCUCGAUGUCGGCUCAUCACAUCCUGGGG-CU-GGAGAAGGUCCCAAG-GGUCCGGCU NUUCGCCGGUUAAAGUGGU---ACGUGAGCUGGGUUCAGAACGUCGUGAGACA-GUUCGG UCCCUAUCCGAUGCGAG-CGC-AGGAAAUUUGAGAGGGUAGUACGAGAGGACCGG----- -------------------------------------------- [35] 'Flavoba_od' CCGGCGGAUGGGUGAGUAACGCGUAUGCAACC-UNCCUUUUACAG--GGGAAUAGCCCGG AGAAAUUCGGAUUAAUGCUCCAUCGGUAAAAGAUGGGCAUGCGUAUCAUUAGCUAGUUGG UGUGGUAACGGCAUACCAAGGCUNCGAUGAUUAGGGGUCCUGAGAGGGAGAUCCCCCACA CUGGUACUGAGACACGGACCAGACUCCUACGGGAGGCAGCAGUGAGGAAUAUUGGUCAAU GGAGGCAACUCUGAACCAGCCAUGCCGCGUGCAGGAAUAAGGAUCGGCUNACUCCG-UGC CAGCAGCCGCGNNNAUAC-GGAGNAUCCNAGCGUUAUCCGGAAUUAUUGGGUUUAAAGG- GUUCGUAGGCGGU--GAC--------GCU-----GAU--GAACGAAA-GCGUGGGUAGCG AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCG-UAAACGAUGAGCGAAAGUG--AUA AGCC-------A--CCUGGGGAGUA-CGUU----CGCAAGAAUGAAACUCAAA-GGAAUU GACG----GGGCCNGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAU-GNUACG--CG AGGAACCUUACCUN---------------------------------------------- ---------AAA-----A-A------GGUGCUGCAUGGUUGUCGUCAGC-UCGUGCC-GU GAGGUGUCAGGUUA-AGUCCUAUAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAAUCAUCACGGCCN--------NUACGGGGC-UAC-ACACGUGCUACAAUGGACAGA AA-GAGUUCGGAUUGGAGUCUGCAA---CUCGACUCCAUGAAGC-----------UGGAA UCGC---------------UAGUAAUCGC----CGGUGAAUACGUUCCCGGGCNUUGUAC ACACCGCNCGUCAAGN-CAUGGAAGCUG--C--CUAGGGUAAAAC--------------- ----------U---------------GGGGAAUGCCUAGGGCGAAGAAGGACGUGCGAAA AGCCGGGNNUUGGUAUCCG-AAUGGGGCAAGAACUGAAA-CAUCUAAGUAG-GCAGAGGA GAAGAAA--ACAAAA---GAUUCCGCUAGU-AGUGGCGAGCGAACCUGAGUAGGAAGGCU AAAUACUGACCGAUAGUGA-ACGU-ACCGUGAGGG--A-AAGGUG-AAAAGAACCGUAAC GGAGUGAAUAGAUCCUGAAACCUGCCUNUUGCAUAAUGAGCCUACGAGUAGCGAAAGCGA AGACGCGAAA--CCGUGUGAUC-UA-CCCAUGGGC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGUGAAAGGCCAAUCAAACUCGGA-AAUAGCUCGUACUCCCCGAAAGCGGG UAGAG-CCAAACUCCGAAU---------------------------------------GC GAGAG-GGAAAGAACCCAGACCAUCAGCUAAGGUCCCNAAUAAGUUA---------GACA GCUAGGAUGUUGGCUUGGAAGCAG---CCACAUUUAAAGAGUGCGUAACAGCUCACUAGU CGAGAGCAUGGAUAAUA-AUCGGGCAUA-AGUAGGGGAGCAUUCCCGUACCGUAAACCGA CACAGGUAGC-------------------------------------UAAGGCAA-GGAA CUAGG-------CAAAA-UAGAC---C-UGUAACUUCGGGAGAAAGCAG----------- ----UGAAAAGGUC-CAGGCGACUGUUUA--UCAAAAACACAG-GGCUCUGCAAAAUCGU AAGUAUAG----GGCCUGACACCUGCCCGGUGCUGGAAGGUUAAGCAUU----------- --------GAAUUGAAGCCCCAGUAAACGGCGGCCGUAANN------NUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------ACGAA------ ------------------------------------UGGUGUAACGACUGUCUCAGCACC CGCAGUGG------------GACGAAAAGACCCUGUGCA-CCUUUACUAUAGCUUAGU-- -----------------------AUUGUGUG---UAGGAUAGGUGGGAGAGGACAUUGCU UGGUGGGUA--GUUUGAC-UGGGGUN---------------------------------- --------------------------------------GU-CGCCU-C--CAAAAGAGUA ACGGAGGCUUCUAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUAGAGCAUAGUGAUCCAAGGGCCAUCGCUCAA--AGGAU-----AAAAG GUACGCCNNNGAUAACA-GGCUGAUCUCCCCCAAGAGCUCAUAUCGACGGGGNNGUUUGG CACCUCGAUGUCGGCUCGUCACAUCCUGGGG-CU-GGAGAAGGUCCCAAG-GGU-----U GUUCGCCCAUUAAAGUGGC---ACGCGAGCUGGGUUCAGAACGUCGUGAGACA-GUUCGG UCUCUAUCUACUGUGGG-CGU-UAGAAAUUUGAGUGGAUAGUACGAGAGGACCGAA---- -------------------------------------------- [36] 'Buchner_ap' GCGGCAAACGGGUGAGUAAUAUCUGGG-GAUC-UGCCCAAAAGAG--GGGGAUAACUACU AGAAAUGGUAGCUAAUACCGCAUUGCUUUUGGAUGAACCCAGACGAGAUUAGCUUGUUGG UAAGGUAAAAGCUUACCAAGGCAACGAUCUCUAGCUGGUCUGAGAGGAUAACCAGCCACA CUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUCGGGAAUAUUGCACAAU GGGCGAAAGCCUGAUGCAGCUAUGCCGCGUGUAUGAAGAAGCACCGGCUAACUCCG-UGC CAGCAGCCGCGGUAAUAC-GGAGGGUGCGAGCGUUAAUCAGAAUUACUGGGCGUAAAGA- GCACGUAGGUGGU--GAC--------ACU-----GAG--GUGCGAAA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--AUGCCG-UAAACGAUGAGCUAACGCG--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGCUAAAACUCAAA-UGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAU-GCAACG--CG AAAAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGUU-GU GAAAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGACGACGU-- -CAAGUCAUCAUGGCCC--------UUACGGGGC-UAC-ACACGUGCUACAAUGGACAAA GA-GAGUCCGGACUGGAGUCUGCAA---CUCGACUCCACGAAGU-----------CGGAA UCGC---------------UAGUAAUCGA----CGGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACAC-CAUGGGAGCUG--GGGUGAAGUCGUAACAAGGUAACCGUAGGG GAACCUGCGGUUGGAUCACCUCCUUAGGUGAAUGCCUUGGGCGAAGAAGGACGUGCGAAA AGCCGGCAAGCUGUUUCCG-AAUGGGGAAAGAACUGAAA-CAUCUAAGUAC-CUUGAGGA AAAGAAA--UCAACC---GAUUCCCUUAGU-AGUGGCGAGCGAAGAAAAGUAGAAAGGCU AAAUACUGACCGAUAGUGA-ACGU-ACCGUAAGGG--A-AAGGCG-AAAAGAACCCCAGG GGAGUGAAUAGAACCUGAAACCUACCUUUUGUAUAAUGGGUCAGCGACUAGGGAAACCGA AGACCCGAAA--CCCGGUGAUC-UA-GCCAUGAGC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGUGAAAGGCCAAUCAAACCGGGA-GAUAGCUGGUUCUCCCCGAAAGCCGG UAGAG-CCAAACUCCGAAU---------------------------------------AC GAAAG-GGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAUAAGUGA---------AACA GCCAGGAUGUUGGCUUAGAAGCAG---CCACAUUUAAAGAAAGCGUAAUAGCUCACUGGU CAAGUGCGCGGAAGAUGUAACGGGGCUA-AGUAGGGGAGCGUUCUCGUACCUUAAACCGA CACAGGUAGC-------------------------------------UAAGGCAA-GGAA CUAGG-------CAAAA-UAGUG---C-CGUAACUUCGGGAGAAGGAAG----------- ----AUACCAGCUG-GCUGCAACUGUUUA--UUAAAAACACAG-CACUGUGCAAACACGA AAGUAUAC----GGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAGCUCC----------- --------AGACUGAAGCCCCGGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------ACGAA------ ------------------------------------UGGCGUAAUGACUGUCUCCACAUC CGCGGCAA------------GACGGAAAGACCCCGUGAA-CCUUUACUAUAGCUUGAC-- -----------------------ACUGCGUG---UAGGAUAGGUGGGAGGAGACAGUGUC UGGUGGGUA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CUCCU-C--CCAAAGAGUA ACGGAGGAGUACGAAGAUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCAGGUCUUAGUGAUCCAAGGGCCAUCGCUCAA--CGGAU-----AAAAG GUACUCCGGGGAUAACA-GGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGG CACCUCGAUGUCGGCUCAUCACAUCCUGGGG-CU-GAAGCAGGUCCCAAG-GGUAUGGCU GUUCGCCAUU-AAAGUGGU---ACGCGAGCUGGGUUUAGAACGUCGUGAGACA-GUUCGG UCCCUAUCUGCCGUGGA-CGU-UGGAAGAUUGAGGGGGUAGUAGCAGAGGACCGAAUAAG UGCUGAACGCAUAUAAGCACGAA--------------------- [37] 'Escheri_co' GUGGCGGACGGGUGAGUAAUGUCUGGG-AAAC-UGCCUGAUGGAG--AGGGAUAACUACU GGAAACGGUAGCUAAUACCGCAUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGG UGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACA CUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAU GGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGCACCGGCUAACUCCG-UGC CAGCAGCCGCGGUAAUAC-GGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGC- GCACGCAGGCGGU--GAC--------GCU-----CAG--GUGCGAAA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCG-UAAACGAUGAGCUAACGCG--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGUUAAAACUCAAA-UGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAU-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGUU-GU GAAAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAGUCAUCAUGGCCC--------UUACGGGGC-UAC-ACACGUGCUACAAUGGACAAA GA-GAGUCCGGAUUGGAGUCUGCAA---CUCGACUCCAUGAAGU-----------CGGAA UCGC---------------UAGUAAUCGA----CGGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACAC-CAUGGGAGCUG--GGGUGAAGUCGUAACAAGGUAACCGUAGGG GAACCUGCGGUUGGAUCACCUCCUUAGGUGGAUGCCCUGGGCGAUGAAGGACGUGCGAUA AGCCGGUAAGGUGUUUCCG-AAUGGGGAAAGAACUGAAA-CAUCUAAGUAC-CCCGAGGA AAAGAAA--UCAACC---GAUUCCCCCAGU-AGCGGCGAGCGAAGAUGAGUAGGAAGGCU AAAUACUGACCGAUAGUGA-ACGU-ACCGUGAGGG--A-AAGGCG-AAAAGAACCCCAGG GGAGUGAAAAGAACCUGAAACCUACCUUUUGUAUAAUGGGUCAGCGACUAGGGAAACCGA AGACCCGAAA--CCCGGUGAUC-UA-GCCAUGGGC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGUGAAAGGCCAAUCAAACCGGGA-GAUAGCUGGUUCUCCCCGAAAGCCGG UAGAG-CCAAACUGCGAAU---------------------------------------AC AAGAG-GGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAUAAGUGA---------GACA GCCAGGAUGUUGGCUUAGAAGCAG---CCACAUUUAAAGAAAGCGUAAUAGCUCACUGGU CGAGUGCGCGGAAGAUGUAACGGGGCUA-AGUAGGGGAGCGUUCUCGUACCCCAAACCGA CACAGGUGGC-------------------------------------CAAGGCAA-GGAA CUAGG-------CAAAA-UGGUG---C-CGUAACUUCGGGAGAAGGAAG----------- ----AUACCAGCUG-GCUGCAACUGUUUA--UUAAAAACACAG-CACUGUGCAAACACGA AAGUAUAC----GGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAGCUCU----------- --------UGAUCGAAGCCCCGGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------ACGAA------ ------------------------------------UGGCGUAAUGACUGUCUCCACACC CGCGGCAA------------GACGGAAAGACCCCGUGAA-CCUUUACUAUAGCUUGAC-- -----------------------ACUGUGUG---UAGGAUAGGUGGGAGGGGACAGUGUC UGGUGGGUA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CUCCU-C--CUAAAGAGUA ACGGAGGAGCACGAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCAGGUCAUAGUGAUCCAAGGGCCAUCGCUCAA--CGGAU-----AAAAG GUACUCCGGGGAUAACA-GGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGG CACCUCGAUGUCGGCUCAUCACAUCCUGGGG-CU-GAAGUAGGUCCCAAG-GGUAUGGCU GUUCGCCAUUUAAAGUGGU---ACGCGAGCUGGGUUUAGAACGUCGUGAGACA-GUUCGG UCCCUAUCUGCCGUGGG-CGC-UGGAGAACUGAGGGGGUAGUACGAGAGGACCGGAUAAG UGCUGAAAGCAUCUAAGCACGAA--------------------- [38] 'Vibrio_ch' GCGGCGGACGGGUGAGUAAUGCCUGGG-AAAU-UGCCCGGUAGAG--GGGGAUAACCAUU GGAAACGAUGGCUAAUACCGCAUCGCUACCGGAUAUGCCCAGGUGGGAUUAGCUAGUUGG UGAGGUAAGGGCUCACCAAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGAUCAGCCACA CUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAU GGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGCACCGGCUAACUCCG-UGC CAGCAGCCGCGGUAAUAC-GGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGC- GCAUGCAGGUGGU--GAC--------ACU-----CAG--AUGCGAAA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCG-UAAACGAUGAGCUAACGCG--UUA AGCCC------G--CCUGGGGAGUA-CGGU----CGCAAGAUUAAAACUCAAA-UGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAU-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGUU-GU GAAAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGACGACGU-- -CAAGUCAUCAUGGCCC--------UUACGGGGC-UAC-ACACGUGCUACAAUGGACAGA GG-GAGUCCGGAUUGGAGUCUGCAA---CUCGACUCCAUGAAGU-----------CGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACAC-CAUGGGAGCUG--GGGUGAAGUCGUAACAAGGUAGCGCUAGGG GAACCUGGCGCUGGAUCACCUCCUU-GGUGGAUGCCUGGGGCGAUGAAGGACGUACGAUA AGCAGAUAAGGCAUUUCCG-AAUGGGGAAAGAACUGAAA-CAUCUAAGUAC-CCCGAGGA GAAGAAA--UCAACC---GAUUCCGGUAGU-AGCGGCGAGCGAAGA---GUAGGAAGGCU AAAUACUGACCGAUAGUGA-ACGU-ACCGUGAGGG--A-AAGGCG-AAAAGAACCCCAGG GGAGUGAAUAGAACCUGAAACCUACCUUUUGUAUAAUGGGUCAGCGACUAGCGAAAGCGA AGACCCGAAA--CCGGGUGAUC-UA-GCCAUGGGC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGUGAAAGGCCAAUCAAACUCGGA-GAUAGCUGGUUCUCCCCGAAAGCCGG UAGAG-CCAAACUCCGAAU---------------------------------------AC GAGAG-GGAAACAACCCAGACCGACAGCUAAGGUCCCAAAUAAGUGA---------CACA GCUAGGAUGUUGGCUUAGAAGCAG---CCACAUUUAAAGAAAGCGUAAUAGCUCACUAGU CGAGUGCGCGGAAGAUGUAACGGGGCUA-AGUAGGGGAGCGUUCUCGUACCCCAAACCGA CACAGGUGGC-------------------------------------CAAGGCAA-GGAA CUAGG-------CAAAA-UGGUA---C-CGUAACUUCGGGAGAAGGCAG----------- ----AUACCAGGUG-GCUGCAACUGUUUA--UUAAAAACACAG-CACUGUGCAAAAUCGC AAGUAUAC----GGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAGCUCU----------- --------UGAUCGAAGCCCCGGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------ACGAA------ ------------------------------------UGGCGUAAUGACUGUCUCCACACC CGCGGCUA------------GACGGAAAGACCCCGUGAA-CCUUUACUACAGCUUGGC-- -----------------------ACUGUGUG---UAGGAUAGGUGGGAGGGGACAGUGCC UGGUGGGUA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CUCCU-C--CCAAAGAGUA ACGGAGGAGCACGAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCAGGUCAUAGUGAUCCAAGGGCCAUCGCUCAA--CGGAU-----AAAAG GUACUCCGGGGAUAACA-GGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGG CACCUCGAUGUCGGCUCAUCACAUCCUGGGG-CU-GAAGUCGGUCCCAAG-GGUAUGGCU GUUCGCCAUUUAAAGUGGU---ACGCGAGCUGGGUUUAGAACGUCGUGAGACA-GUUCGG UCCCUAUCUGCCGUGGG-CGU-UGGAAGAUUGAAGGGGUAGUACGAGAGGACCGGAUAAG CGCUGAAAGCAUCUAAGCGCGAA--------------------- [39] 'Pseudom_ae' GCGGCGGACGGGUGAGUAAUGCCUAGG-AAUC-UGCCUGGUAGUG--GGGGAUAACGUCC GGAAACGGCCGCUAAUACCGCAUCGCUAUCAGAUGAGCCUAGGUCGGAUUAGCUAGUUGG UGGGGUAAAGGCCUACCAAGGCGACGAUCCGUAACUGGUCUGAGAGGAUGAUCAGUCACA CUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAU GGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGUGUGAAUAAGCACCGGCUAACUUCG-UGC CAGCAGCCGCGGUAAUAC-GAAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGC- GCGCGUAAGUGGU--GAC--------ACU-----GAG--GUGCGAAA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCG-UAAACGAUGACGUAACGCG--AUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGUUAAAACUCAAA-UGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAA-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGUAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAGUCAUCAUGGCCC--------UUACGGGGC-UAC-ACACGUGCUACAAUGGACAAA GG-GAGUCCGGAUCGCAGUCUGCAA---CUCGACUGCGUGAAGU-----------CGGAA UCGC---------------UAGUAAUCGA----CGGUGAAUACGUCCCCGGGCCUUGUAC ACACCGCCCGUCACAC-CAUGGGAGCUG--GGGUGAAGUCGUAACAAGGUAGCCGUAGGG GAACCUGCGGCUGGAUCACCUCCUUAGGUGGAUGCCUUGGGCGAUGAAAGACGUGCGAAA AGCCGGGGAGUCGUCUCUG-AAUGGGGGAAGAACUGAAA-CAUCUAAGUAC-CCUGAGGA AAAGAAA--UCAACC---GAUUCCCUUAGU-AGUGGCGAGCGAAGA---GUAGGAAGGCU AAAUACUGACCGAUAGUGA-ACGU-ACCGUGAGGG--A-AAGGCG-AAAAGAACCCCAGG GGAGUGAAUAGAACCUGAAACCUACCUUUUGUAUAAUGGGUCAGCGACUGCGAAAAGCGA AGACCCGAAA--CCGGGCGAUC-UA-UCCAUGAGC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGUGAAAGGCUAAUCAAGCUCGGA-GAUAGCUGGUUCUCCUCGAAAGCCGG UAGAG-CCAAACUCCGAAU---------------------------------------AC AAAAG-GGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAUAAGUGA---------GACA GCUAGGAGGUUGGCUUAGAAGCAG---CCACCUUUAAAGAAAGCGUAAUAGCUCACUAGU CGAGUGCGCGGAAGAUGUAACGGGGCUA-AGUAGAGGAGCGUUCCCGUACCCCAAACCGA CACAGGUGGC-------------------------------------CAAGGCAA-GGAA CUAGG-------CAAAA-UGGCA---C-CGUAACUUCGGGAGAAGGAAG----------- ----AUACCAGGCC-GCUGCGACUGUUUA--UUAAAAACACAG-CACUCUGCAAACACGA AAGUAUAG----GGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAGCUCU----------- --------UGAUCGAAGCCCCGGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------ACGAA------ ------------------------------------UGGCGUAACGACUGUCUCCACAUC CGCGGCUA------------GACGGAAAGACCCCGUGAA-CCUUUACUGUAGCUUUGC-- -----------------------ACUGUGUG---UAGGAUAGGUGGGAGGGGACAGUGUA UGGUGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CUCCU-C--CUAAAGAGUA ACGGAGGAGUACGAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUAGGUCUUAGUGAUCCAAGGGCCAUCGCUCAA--CGGAU-----AAAAG GUACUCCGGGGAUAACA-GGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGG CACCUCGAUGUCGGCUCAUCACAUCCUGGGG-CU-GAAGCCGGUCCCAAG-GGUAUGGCU GUUCGCCAUUUAAAGUGGU---ACGCGAGCUGGGUUUAGAACGUCGUGAGACA-GUUCGG UCCCUAUCUGCCGUGGA-CGU-UUGAGAUUUGAGAGGGUAGUACGAGAGGACCGGAUAAC CGCUGAAAGCAUCUAAGCGGGAA--------------------- [40] 'Xylella_fa' GUGGCGGACGGGUGAGGAAUACAUCGG-AAUC-UACCUUAUCGUG--GGGGAUAACGUAG GGAAACUUACGCUAAUACCGCAUUGCGAUUGGAUGAGCCGAUGUCCGAUUAGCUAGUUGG UGAGGUAAAGGCUCACCAAGGCGACGAUCGGUAGCUGGUCUGAGAGGAUGAUCAGCCACA CUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAU GGGCGCAAGCCUGAUCCAGCUAUGCCGCGUGGGUGAAUAAGCACCGGCUAACUUCG-UGC CAGCAGCCGCGGUAAUAC-GAAGGGUGCAAGCGUUACUCGGAAUUACUGGGCGUAAAGG- GUGCGUAGGUGGU--GAC--------ACU-----GAG--GCACGAAA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCC-UAAACGAUGAGCUAACGCG--UUA AGCC-------G--CCUGGGGAGUA-CGGU----CGCAAGACUGAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGUAUGUGGUUUAAUUCGAU-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAGUCAUCAUGGCCC--------UUACGGGGC-UAC-ACACGUACUACAAUGGACAGA GG-GAGUCCGGAUUGGAGUCUGCAA---CUCGACUCCAUGAAGU-----------UGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACAC-CAUGGGAGCUG--GGGUGAAGUCGUAACAAGGUAGCCGUAUCG GAAGGUGCGGCUGGAUCACCUCCUUUGGUGGAUGCCUUGGGCGAUGAAGGACGUGCGAAA AGUCGGGGAGCUGUAUCCG-AAUGGGGGAAGAACUGAAA-UAUCUAAGUAA-CCAGAGGA AAAGAAA--UCAACA---GAUUCCCUGAGU-AGUGACGAGCGAAGA---GUAGGAAGGCU AAAUACUGACCGAUAGUGA-ACGU-ACCGUGAGGG--A-AAGGCG-AAAAGAACCCCAGG GGAGUGAAUAGAACCUGAAACCUACCUUUUGUAUAAUGGGUCAGCGACUG-GGAAACCGA AGACCCGAAA--CCGGGUGAUC-UA-GUCAUGUCC--------------------A-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------GAAGUGAAAAGCUAAUCGAACCCGGA-GAUAGCUGGUUCUCCUCGAAAGCCGG UAGAG-CCAAACUCCGAAU---------------------------------------AC AAAAG-GGAAACAACCCAGACCCACAGCUAAGGUCCCAAAUAAGUGA---------GACA GCCAGGAGGUUGGCUUAGAAGCAG---CCACCUUUAAAGAAAGCGUAAUAGCUCACUGGU CGAGUGCGCGGAAGAUUUAACGGGGCUA-AGUAGAGGAGCGUUCCCGUACCGUAAACCGA CACAGGUAGC-------------------------------------UCAGGCAA-GGAA CUAGG-------CAACA-UGGCA---C-CGUAACUUCGGGAGAAGGCAG----------- ----AAACCAGGCC-GCUGCGACUGUUUA--UCAAAAACACAG-CACUCUGCAAACACGA AAGUAUAG----GGUGUGACGCCUGCCCGGUGCUGGAAGGUUAAGCUCU----------- --------UGAUCGAAGCCCCAGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------ACGAA------ ------------------------------------UGGCGUAACGACUGUCUCCACUCC CGUGGCAA------------GACGGAAAGACCCCGUGAA-CCUUUACUAUAGCUUUAC-- -----------------------ACUGUGUG---UAGGAUAGGUGGGAGGGGACAGUGUA UGGUGGGUA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CUCCU-C--CCAAAGAGUA ACGGAGGAGCACGAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUAGGUCUUAGUGAUCCAAGGGCCAUCGCUCAA--CGGAU-----AAAAG GUACUCCGGGGAUAACA-GGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGG CACCUCGAUGUCGGCUCAUCACAUCCUGGGG-CU-GUAGUCGGUCCCAAG-GGUAUGGCU GUUCGCCAUUUAAAGUGGU---ACGCGAGCUGGGUUCAGAACGUCGUGAGACA-GUUCGG UCCCUAUCUGCCAUGGG-CGU-UGGAGAUUUGAGAGGGUAGUACGAGAGGACCGGAUAAC CGCUGAAAGCAUCUAAGCGGGAA--------------------- [41] 'Rickett_pr' GUGGCAGACGGGUGAGUAACACGUGGG-AAUC-UACCCAUCAGUA--CGGAAUAACUUUU AGAAAUAAAAGCUAAUACCGUAUCGCUGAUGGAUGGGCCCGCGUCAGAUUAGGUAGUUGG UGAGGUAAUGGCUCACCAAGCCGACGAUCUGUAGCUGGUCUGAGAGGAUGAUCAGCCACA CUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAU GGGCGAAAGCCUGAUCCAGCAAUACCGAGUGAGUGAAAAAGCCCCGGCUAACUCCG-UGC CAGCAGCCGCGGUAAGAC-GGAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGA- GUGCGUAGGCGGU--GAC--------GCU-----GAU--GCACGAAA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCG-UAAACGAUGAGCUAACGCA--UUA AGCC-------G--CCUGGGGAGUA-CGGU----CGCAAGAUUAAAACUCAAA-GGAAUU GACG----GGGCUCGC-ACAA-GCGGUGGAGCAUGCGGUUUAAUUCGAU-GUUACG--CG AAAAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGUUGCAUGGCUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGACGACGU-- -CAAGUCAUCAUGGCCC--------UUACGGGGC-UAC-ACGCGUGCUACAAUGGACAGA GG-GAGUUCGGAUUGUUCUCUGCAA---CUCGAGAGCAUGAAGU-----------UGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCUCGGGCCUUGUAC ACACUGCCCGUCACGC-CAUGGGAGCUG--GGGUGAAGUCGUAACAAGGUAGCCGUAGGG GAACCUGCGGCUGGAUUACCUCCUUAGGUGGAUGCCUUGGGCGAUGAAGGACGUACGAUA AGCCGGGGAGUUGUUUCCG-AAUGGGGAAAGAACUGAAA-UAUCUAAGUAG-CUGGAGGA AAGGACA--UCAACC---GACUCCGUUAGU-AGUGACGAGCGAAGA---GUAAGAAGCCU AAGUACUGACCGAUAGUGA-ACGU-ACCGUGAGGG--A-AAGGUG-AAAAGUACCCCAGG GGAGUGAAUAGUAUCUGAAACCUACCUUUUGUAUAAUGGGUCAGCGACUAGCGAAAGCGA AGACCCGAAA--CCGGGUGAUC-UA-GCCAUGGCC--------------------A-GG- UUG------AA--AU-----------GAAGGACC-------------------------- -------GAAGUGAAAGGCCAAUCAAACUCGGA-UAUAGCUGGUUCUCCGCGAAAGCGGG UAGAG-CCAAACUCCGAAU---------------------------------------GU GAGAG-GGAAAAAGCCCAGACCGCCAUCUAAGGUCCCUAAUAAGUGA---------AACA ACUAGGAUGUUGGCUUAGAAGCAG---CCACAUUUAAAGAAAGCGUAAUAGCUCACUAGU CAAGUGCGCCAACAAUGUAACGGGGCUA-AGUAGCGGAGCGUUCCCGUACCCAAAACCGA CACAGGUGGC-------------------------------------CAAGGCAA-GGAA CUAGG-------CAAAU-UACAU---C-UGUAACUUCGGAAGAAAGCAC----------- ----AAGUUAGGGG-GUAGCGACUGUUUA--UUAAAAACACAG-GGCUCUGCAAAGUCAA UAGUAUAG----GGUCUGACGCCUGCCCAGUGCUGGAAGAUUAAGCUCU----------- --------AAAUUGAAGUCCCAGUGAACGGCGGCCGUAACU------AUGACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCCGC----------------------------------------ACGAA------ ------------------------------------UGGCGUAACGACUGUCUCCAGUCC CGCGGUCA------------GACGGAAAGACCCCGUGAA-CCUUUACUAUAGCUUUGC-- -----------------------ACUGUGUG---CAGGAUAGGUGGGAGAAGACAAUGCA UGGUGGGUA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CCAAAAAGUA ACGGAGGCGCGCGAUGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUCGGUCAUAGUGAUCCAAGGGCCAUCGCUCAA--CGAAU-----AAAAG GUACUCCGGGGAUAACA-GGCUGAUGAUUUCCAAGCGUCCAUAGCGACGAAAUCGUUUGG CACCUCGAUGUCGGCUCAUCACAUCCUGGGG-CU-GGAGAAGGUCCCAAG-GGUUCGGCU GUUCGCCGAUUAAAGUGGU---ACGUGAGCUGGGUUUAGAACGUCGUGAGACA-GUUCGG UCCCUAUCUGCCGUGGG-UGU-AGGAAGUUUGAGAGGAUAGUACGAGAGGACCGAAUAAC UGCUGAAUGCAUCUAAGCAGGAA--------------------- [42] 'Campylo_je' GUGGCGCACGGGUGAGUAAGGUAUAGUUAAUC-UGCCCUACACAA--GAGGACAACAGUU GGAAACGACUGCUAAUACUCUAUCGGUGUAGGAUGAGACUAUAUAGUAUCAGCUAGUUGG UAAGGUAAUGGCUUACCAAGGCUAUGACGCUUAACUGGUCUGAGAGGAUGAUCAGUCACA CUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUAUUGCGCAAU GGGGGAAACCCUGACGCAGCAACGCCGCGUGGAGGAAUAAGCACCGGCUAACUCCG-UGC CAGCAGCCGCGGUAAUAC-GGAGGGUGCAAGCGUUACUCGGAAUCACUGGGCGUAAAGG- GCGCGUAGGCGGU--GAC--------GCU-----AAG--GCGCGAAA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCC-UAAACGAUGAGCUAACGCA--UUA AGCC-------G--CCUGGGGAGUA-CGGU----CGCAAGAUUAAAACUCAAA-GGAAUA GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAA-GAUACG--CG AAGAACCUUACCUU---------------------------------------------- --------GAUA-----ACA------GGUGCUGCACGGCUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGUGGACGACGU-- -CAAGUCAUCAUGGCCC--------UUAUGGGGC-GAC-ACACGUGCUACAAUGGACAAU GA-GAGUUCGGAUUGUUCUCUGCAA---CUCGAGAGCAUGAAGC-----------CGGAA UCGC---------------UAGUAAUCGA----CGGUGAAUACGUUCCCGGGUCUUGUAC UCACCGCCCGUCACAC-CAUGGGAGCUG--GGGUGAAGUCGUAACAAGGUAACCGUAGGA GAACCUGCGGUUGGAUCACCUCCU--GGUGGAUGCCUUGAGCGAUGAAGGACGUACGAUA AGCCGGGGAGCUGUUUCCG-AAUGGGGCAAGAAUUGAAA-CAUCUUAGUAC-CCUCAGGA AAAGAAA--UCAAUA---GAUUGCGUCAGU-AGCGGCGAGCGAACCUGAGUAGGAACCCU AAAUACUGAUCGAUAGUGC-ACGU-ACCGUGAGGG--A-AAGGUG-AAAAGAACUGAAUC AGAGUGAAUAGAACCUGAAACCUGCCUUUUGCAUAAUGAGCCUGCGAGUAGCGAAAGCGA AGACCCGAAA--CGAAGUGAUC-UA-UCCAUGAGC--------------------A-AG- UUG------AA--GU-----------GGAGGACU-------------------------- -------GAAGUGAAAGGCCAAUCAAACUUCGU-GAUAGCUGGUUCUCUCCGAAAGCGGG UAGAG-CCAAACUCCGAAU---------------------------------------AC AAGAG-GGAAACAACCCAGACUACCAGCUAAGGUCCCUAAUAAGUGA---------AACA ACCAGGAGGUUGGCUUAGAAGCAG---CCACCUUUAAAGAAAGCGUAAUAGCUCACUGGU CUAGUGCGCGGAAAAUAUAACGGGGCUA-AGUAGGAGAGCGUUCCCGUACCGUAAACCGA CACAGGUGGC-------------------------------------UAAGGCAA-GGAA CUCUG-------CAAAA-UAGCA---C-CGUAUCUUCGGUAUAAGGCAA----------- ----CAAAGAGUCC-CUCCCGACUGUUUA--CCAAAAACACAG-CACUCUGCUAACUCGU AAGUAUAG----GGUGUGACGCCUGCCCGGUGCUCGAAGGUUAAGCUCU----------- --------UGAUCGAAGCCCGAGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------UUAAAUA CCGACCUGC----------------------------------------AUGAA------ ------------------------------------UGGCGUAACGACUGUCUCAAAACC CGCGGCAA------------GACGGAAAGACCCCGUGGA-CCUUUACUACAGCUUGAC-- -----------------------ACUGUGUG---CAGGAUAGGUGGGAGGGGACAAUGUC UGGUGGGUA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CCAAAUAAUA ACGGAGGCUUACAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUCGGUCUUAGUGAUCCAAGGGCCAUCGCUCAA--AGGAU-----AAAAG GUACCCCGGGGAUAACA-GGCUGAUCUCCCCCAAGAGCUCACAUCGACGGGGAGGUUUGG CACCUCGAUGUCGGCUCAUCGCAUCCUGGGG-CU-GGAGCAGGUCCCAAG-GGUAUGGCU GUUCGCCAUUUAAAGCGGU---ACGCGAGCUGGGUUCAGAACGUCGUGAGACA-GUUCGG UCCCUAUCUGCCGUGGG-CGU-AAGAAGAUUGAAGAGAUAGUACGAGAGGACCGGAUAAA CGCUGAAAGCAUCUAAGCGUGAA--------------------- [43] 'Helicob_py' GUGGCGCACGGGUGAGUAACGCAUAGGUUAUG-UGCCUCUUAGUU--UGGGAUAGCCAUU GGAAACGAUGAUUAAUACCAGAUCGCUAAGAGAUCAGCCUAUGUCCUAUCAGCUUGUUGG UAAGGUAAUGGCUUACCAAGGCUAUGACGGGUAUCCGGCCUGAGAGGGUGAACGGACACA CUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUAUUGCUCAAU GGGGGAAACCCUGAAGCAGCAACGCCGCGUGGAGGAAUAAGCACCGGCUAACUCCG-UGC CAGCAGCCGCGGUAAUAC-GGAGGGUGCAAGCGUUACUCGGAAUCACUGGGCGUAAAGA- GCGCGUAGGCGGU--GAC--------GCU-----GAUU-GCGCGAAA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCC-UAAACGAUGAGCUAACGCA--UUA AGCC-------G--CCUGGGGAGUA-CGGU----CGCAAGAUUAAAA-UCAAA-GGAAUA GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAA-GAUACA--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCACGGCUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGACGACGU-- -CAAGUCAUCAUGGCCC--------UUACGGGGC-UAC-ACACGUGCUACAAUGGACAAA GM-GAGUUCGGAUUGUAGGCUGCAA---CUCGCCUGCAUGAAGC-----------UGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGUCUUGUAC UCACCGCCCGUCACAC-CAUGGGAGCUG--GGGUGAAGUCGUAACAAGGUAACCGUAGU- GAACCUGCGGUUGGAUCACCUCCU--GGCGGAUGCCUUGCGCGAUGAAGGACGUACGAUA AGCUGCGGAGCUGUGUCCG-AAUGGGGCAAGAAGUGAAA-CAUCUCAGUAA-CUAGAGGA AAAGAAA--UCAAC----GAUUCCCUAAGU-AGUGGCGAGCGAACCAGAGUAGGAACCCU AAAUACUGAGCGAUAGCGA-ACGU-ACCGUGAGGG--A-AAGGUG-AAAAGAACCGCAGC GGAGUGAAUAGAACCUGAAACCUGCCUUUUGCAUAAUGAUCCUGCGAGUAGCGAAAGCGA AGACCCGAAG--CUAAGUGAUC-UA-UCCAUGGCC--------------------A-AG- UUG------AA--AU-----------GGAGGACU-------------------------- -------GAAGUGAAAGGCCAAACAAACUUAGU-GAUAGCUGGUUCUCUUCGAAAGCCGG UAGAG-CCAAACUUCGAAU---------------------------------------AC AAAAG-GGGAACAACCCAGACUACCAAAUAAGGUCCCUAAUGAGUGA---------AACA ACCAGGAGGUUGGCUUAGAAGCAG---CCACCUUUAAAGAAAGCGUAACAGCUCACUGGU CUAGUGCGCUGAAAAUAUAACGGGGCUA-AGUAGAAGAGCGUUCCCGUACCGCAAACCGA CACAGGUAGC-------------------------------------UAAGGCAA-GGAA CUCUG-------CAAAC-UAGCA---C-CGUAAGUUCGCGAUAAGGCAG----------- ----CAAAGAGUCC-CUCCCGACUGUUUA--CCAAAAACACAG-CACUUUGCCAACUCGU AAGUAUAA----GGUGUGACGCCUGCCCGGUGCUCGAAGGUUAAGCGUU----------- --------GAAUUGAAGCCCGAGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------UUAAAUA CCGACCUGC----------------------------------------AUGAA------ ------------------------------------UGGCGUAACGACUGUCUCAACACC CGCGGCAA------------GACGGAAAGACCCCGUGGA-CCUUUACUACAACUUAGC-- -----------------------ACUGUGCG---CAGGAUAGGUGGGAGGGGACAAUGCU UGGUGGGUA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CUAAAAAGUA ACGGAGGCUUGCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUCGGUCAUAGUGAUCCAAGGGCCAUCGCUCAA--AGGAU-----AAAAG GUACCCCGGGGAUAACA-GGCUGAUCUCCCCCAAGAGCUCACAUCGACGGGGAGGUUUGG CACCUCGAUGUCGGCUCAUCGCAUCCUGGGG-CU-GGAGCAGGUCCCAAG-GGUAUGGCU GUUCGCCAUUUAAAGCGGU---ACGCGAGCUGGGUUCAGAACGUCGUGAGACA-GUUCGG UCCCUAUCUGCCGUGGG-CGU-AGGAAAGUUGAGGAGAUAGUACGAGAGGACCGGAUAAC UGCUGAAAGCAUCUAAGCAGGAA--------------------- [44] 'Bacillu_su' GCGGCGGACGGGUGAGUAACACGUGGGUAACC-UGCCUGUAAGAC--UGGGAUAACUCCG GGAAACCGGGGCUAAUACCGGAUCAAUUACAGAUGGCCCCGCGGCGCAUUAGCUAGUUGG UGAGGUAACGGCUCACCAAGGCAACGAUGCGUAGCCGACCUGAGAGGGUGAUCGGCCACA CUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCCGCAAU GGACGAAAGUCUGACGGAGCAACGCCGCGUGAGUGAGAAAGCCACGGCUAACUACG-UGC CAGCAGCCGCGGUAAUAC-GUAGGUGGCAAGCGUUGUCCGGAAUUAUUGGGCGUAAAGG- GCUCGCAGGCGGU--GAC--------GCU-----GAG--GAGCGAAA-GCGUGGGGAGCG AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCG-UAAACGAUGAGCUAACGCA--UUA AGCC-------G--CCUGGGGAGUA-CGGU----CGCAAGACUGAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAA-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGGUGCAUGGUUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUGCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAAUCAUCAUGCCCC--------UUAUGGGGC-UAC-ACACGUGCUACAAUGGACAAA GG-GAGUUCGGAUCGCAGUCUGCAA---CUCGACUGCGUGAAGC-----------UGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACAC-CACGAGAGUUG--GGGUGAAGUCGUAACAAGGUAGCCGUAUCG GAAGGUGCGGCUGGAUCACCUCCUUUGGUGGAUGCCUUGGCCGAUGAAGGACGGGCGAUA UGCCGGGGAGCUGUUUCCG-AAUGGGGAAAGAACUGAAA-CAUCUAAGUAC-CCGGAGGA AGAGAAA--GCAAAU---GAUUCCCUGAGU-AGCGGCGAGCGAACCUGAGUACGAAGGCU AAAUACUGACCGAUAGUGA-ACGU-ACCGUGAGGG--A-AAGGUG-AAAAGCACCCCAGG GGAGUGAAGAGAUCCUGAAACCUGCCUUUUGUAGAAUGAACCGGCGAGUAGCGAAAGCGA AGACCCGAAA--CCAGGUGAUC-UA-CCCAUGUCC--------------------A-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------GAAGUGAAAUGCCAAUCGAACCUGGA-GAUAGCUGGUUCUCUCCGAAAGCCGG UAGAG-CCAAACUCCGAAU---------------------------------------GC GAAAG-GGAAACAGCCCAGACCGCCAGCUAAGGUCCCAAAUAAGUGA---------GACA ACCAGGAUGUUGGCUUAGAAGCAG---CCACAUUUAAAGAGUGCGUAAUAGCUCACUGGU CGAGUGCGCCGAAAAUGUACCGGGGCUA-AGUAGGAGAGCGUUCCCGUACCGCAAACCGA CACAGGUAGC-------------------------------------UAAGGUAA-GGAA CUCGG-------CAAAA-UGACC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGAAUAGGCC-CAGGCGACUGUUUA--GCAAAAACACAG-GUCUCUGCGAAGCCGU AAGUAUAG----GGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGGUGC----------- --------GAAUUGAAGCCCCAGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCCGC----------------------------------------ACGAA------ ------------------------------------AGGCGCAACGACUGUCUCAACACC CGCGACAG------------GACGGAAAGACCCCGUGGA-GCUUUACUGCAGCCUGAU-- -----------------------AUUGUGUA---CAGGAUAGGUAGGAGCAGACAGUGUC AGGUGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CUAAAAGGUA ACGGAGGCGCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUCGGGCUUAGUGAUCCAAGGGCCAUCGCUCAA--CGGAU-----AAAAG CUACCCCGGGGAUAACA-GGCUUAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUUGG CACCUCGAUGUCGGCUCAUCGCAUCCUGGGG-CU-GUAGUCGGUCCCAAG-GGUUGGGCU GUUCGCCCAUUAAAGCGGU---ACGCGAGCUGGGUUCAGAACGUCGUGAGACA-GUUCGG UCCCUAUCCGUCGCGGG-CGC-AGGAAAUUUGAGAGGAUAGUACGAGAGGACCGGAUAAG UGCUGAAAGCAUCUAAGCAUGAA--------------------- [45] 'Staphyl_au' GCGGCGGACGGGUGAGUAACACGUGGAUAACC-UACCUAUAAGAC--UGGGAUAACUUCG GGAAACCGGAGCUAAUACCGGAUCACUUAUAGAUGGAUCCGCGCUGCAUUAGCUAGUUGG UAAGGUAACGGCUUACCAAGGCAACGAUGCAUAGCCGACCUGAGAGGGUGAUCGGCCACA CUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCCGCAAU GGGCGAAAGCCUGACGGAGCAACGCCGCGUGAGUGAGAAAGCCACGGCUAACUACG-UGC CAGCAGCCGCGGUAAUAC-GUAGGUGGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGC- GCGCGUAGGCGGU--GAC--------GCU-----GAU--GUGCGAAA-GCGUGGGGAUCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCG-UAAACGAUGAGCUAACGCA--UUA AGCC-------G--CCUGGGGAGUA-CGAC----CGCAAGGUUGAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAA-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGGUGCAUGGUUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACAU-- -CAAAUCAUCAUGCCCC--------UUAUGGGGC-UAC-ACACGUGCUACAAUGGACAAA GG-GAGUUCGGAUUGUAGUCUGCAA---CUCGACUACAUGAAGC-----------UGGAA UCGC---------------UAGUAAUCGA----CGGUGAAUACGUUCCCGGGUCUUGUAC ACACCGCCCGUCACAC-CACGAGAGUUG--GGGUGAAGUCGUAACAAGGUAGCCGUAUCG GAAGGUGCGGCUGGAUCACCUCCUUUGGUGGAUGCCUUGGCCGAUGAAGGACGUUCGAUA UGCUGGGGAGCUGUUUCCG-AAUGGGGAAAGAACUGAAA-CAUCUUAGUAC-CCGGAGGA AGAGAAA--GAAAAU---GAUUCCCUUAGU-AGCGGCGAGCGAACCUGAGUACGAAGGCU AAAUACUGACCGAUAGUGA-ACGU-ACCGUGAGGG--A-AAGGUG-AAAAGCACCCCAGG GGAGUGAAUAGAACCUGAAACCUGCCUUUUGUAGAAUGAACCGGCGAGUAGCGAAAGCGA AGACCCGAAA--CCAGGUGAUC-UA-CCCUUGGUC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGAGAAAUUCCAAUCGAACCUGGA-GAUAGCUGGUUCUCUCCGAAAGCCGG UAGAG-CCAAACUCCGAAU---------------------------------------GC GAAAG-GGAAACAGCCCAGACCACCAGCUAAGGUCCCAAAUAAGUGA---------GACA ACUAGGAUGUUGGCUUAGAAGCAG---CCACAUUUAAAGAGUGCGUAAUAGCUCACUAGU CGAGUGCGCCGAAAAUGUACCGGGGCUA-AGUAGGAGAGCGUUCCCGUACCGCAAACCGA CACAGGUAGC-------------------------------------UAAGGUAA-GGAA CUCGG-------CAAAA-UGACC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGAAUAGGCC-CAAGCGACUGUUUA--UCAAAAACACAG-GUCUCUGCUAAACCGU AAGUAUAG----GGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGCUAC----------- --------GAAUCGAAGCCCCAGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCCGC----------------------------------------ACGAA------ ------------------------------------AGGCGUAACGACUGUCUCAACACC CGCGACAG------------GACGGAAAGACCCCGUGGA-GCUUUACUGUAGCCUGAU-- -----------------------AUUGUGUA---CAGGAUAGGUAGGAGCAGACAGUGUC AGGCGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CUAAAAGGUA ACGGAGGCGCUCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGACGGACUUAGUGAUCCAAGGGCCAUCGCUCAA--CGGAU-----AAAAG CUACCCCGGGGAUAACA-GGCUUAUCUCCCCCAAGAGUUCACAUCGACGGGGAGGUUUGG CACCUCGAUGUCGGCUCAUCGCAUCCUGGGG-CU-GUAGUCGGUCCCAAG-GGUUGGGCU GUUCGCCCAUUAAAGCGGU---ACGCGAGCUGGGUUCAGAACGUCGUGAGACA-GUUCGG UCCCUAUCCGUCGUGGG-CGU-AGGAAAUUUGAGAGGAUAGUACGAGAGGACCGGAUAAG UGCUGAAAGCAUCUAAGCAUGAA--------------------- [46] 'Lactoco_la' GCAGCGAACGGGUGAGUAACGCGUGGGGAAUC-UGCCUUUGAGCG--GGGGACAACAUUU GGAAACGAAUGCUAAUACCGCAUCACUCAAAGAUGAUCCCGCGUUGUAUUAGCUAGUUGG UGAGGUAAAGGCUCACCAAGGCGAUGAUACAUAGCCGACCUGAGAGGGUGAUCGGCCACA UUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCGGCAAU GGACGAAAGUCUGACCGAGCAACGCCGCGUGAGUGAGAAAGGGACGGCUAACUACG-UGC CAGCAGCCGCGGUAAUAC-GUAGGUCCCGAGCGUUGUCCGGAUUUAUUGGGCGUAAAGC- GAGCGCAGGUGGU--GAC--------ACU-----GAG--GCUCGAAA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCG-UAAACGAUGAGCUAACGCA--AUA AGCC-------G--CCUGGGGAGUA-CGAC----CGCAAGGUUGAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAA-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGGUGCAUGGUUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAAUCAUCAUGCCCC--------UUAUGGGGC-UAC-ACACGUGCUACAAUGGACAAC GA-GAGUUCGGAUUGUAGGCUGCAA---CUCGCCUACAUGAAGU-----------CGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACAC-CACGGGAGCUG--GGGUGAAGUCGUAACAAGGUAGCCGUAUCG GAAGGUGCGGCUGGAUCACCUCCUUUGGUGGAUGCCUUGGCCGAUGAAGGACGUGCGAUA UUCGGGGGAGCAGUCUCCG-AAUGGGGAAAGAACUGAAA-CAUCUAAGUAC-CUGCAGGA AGAGAAA--GUAAAA---GAUUUCGUAAGU-AGCGGCGAGCGAACCUGAGUAGGAACCCU AAAUACUGACCGAUAGUGA-ACGU-ACCGUGAGGG--A-AAGGUG-AAAAGAACCCCAGG GGAGUGAAUAGCACCUGAAACCUGCCUUUUGUAGAAUGAACCGGCGAGUAGGGAAACCGA AGACCCGAAA--CCUAGUGACC-UA-UCCAUGAGC--------------------A-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------GAAGAGAAAUUCCAAACGAACUGGGA-GAUAGCUGGUUCUCUCCGAAAGCGGG UAGAG-CUAAACUCCGAAU---------------------------------------GC GAAAG-GGAAACAGCCCAGACCAACAGCUAAGGUCCCAAAUAAGUGA---------GACA ACUAGGAUGUUAGCUCAGAAGCAG---CUACAUUCAAAGAGUGCGUAAUAGCUCACUAGU CGAGUGCGCCGAAAAUGUACCGGGGCUA-AGUAGGAGAGCGUUCCCGUACCGCAAACCGA CACAGGUAGC-------------------------------------UCAGGUAA-GGAA CUCGG-------CAAAA-UAGCC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGAAUAGGCC-CAAGCAACUGUUUA--UCAAAAACACAG-CUCUCUGCUAAACCGC AAGUAUAG----GGGGUGACGCCUGCCCGGUGCUGGAAGGUUAAGGUAU----------- --------GAAUUGAAGCCCCAGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCCGC----------------------------------------ACGAA------ ------------------------------------AGGCGUAAUGACUGUCUCAACACC CGCGACAG------------GACGGAAAGACCCCAUGGA-GCUUUACUGUAGUUUGAU-- -----------------------AUUGUGUA---CAGGAUAGGUAGGAGCAGACAGUGUC UGACGGACA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CUAAAGAGUA ACGGAGGCGCUCAAAGGUG----------------------------------------- ------------------------------------------------------------ ------GAAACUAGGACUUAGUGAUCCAAGGGCCAUCGCUCAA--CGGAU-----AAAAG CUACCCUGGGGAUAACA-GGCUUAUCUCCCCCAAGAGUUCACAUCGACGGGGAGGUUUGG CACCUCGAUGUCGGCUCGUCGCAUCCUGGGG-CU-GUAGUCGGUCCCAAG-GGUUGGGCU GUUCGCCCAUUAAAGCGGC---ACGCGAGCUGGGUUCAGAACGUCGUGAGACA-GUUCGG UCCCUAUCCGUCGCGGG-CGU-AGGUAAUUUGAGAGGAUAGUACGAGAGGACCGGAUAAG CGCUGAAAGCAUCUAAGUGCGAA--------------------- [47] 'Leucono_me' GUGGCGAACGGGUGAGUAACACGUGGACAACC-UGCCUCAAGGCU--GGGGAUAACAUUU GGAAACAGAUGCUAAUACCGAAUCACCUAGAGAUGGAUCCGCGGUGCAUUAGUUAGUUGG UGGGGUAAAGGCCUACCAAGACAAUGAUGCAUAGCCGAGUUGAGAGACUGAUCGGCCACA UUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCUGCAGUAGGGAAUCUUCCACAAU GGGCGAAAGCCUGAUGGAGCAACGCCGCGUGUGUGAGAAAGGGACGGCUAAAUACG-UGC CAGCAGCCGCGGUAAUAC-GUAUGUCCCGAGCGUUAUCCGGAUUUAUUGGGCGUAAAGC- GAGCGCAGACGGU--GAC--------GUU-----GAG--GCUCGNAA-GUGUGGGUAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACACCG-UAAACGAUGAGCUAACGCA--UUA AGCC-------G--CCUGGGGAGUA-CGAC----CGCAAGGUUGAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAA-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGGUGCAUGGUCGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGCGGGGACGACGU-- -CAGAUCAUCAUGCCCC--------UUAUGGGGC-UAC-ACACGUGCUACAAUGGACAAC GA-GAGUUCGGAUUGUAGUCUGCAA---CUCGACUACAUGAAGU-----------CGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGUCUUGUAC ACACCGCCCGUCACAC-CAUGGGAGCCG--GGG-------GUAACAAGGAACC------- -----------UGGAUCACCUCCUUUGGUGGAUGCCUUGGCCGAUGAAGGACGUGCGAUA AGCUGGUGAGCGGUUUCCG-AAUGGGGAAAGAACUGAAA-CAUCUCAUUAG-CAGCAGGA GCAGAAA--GAAAAA---GAUUCCCUAAGU-AGCGGCGAGCGAACCUGAGUACGAAGGCU AAAUACUGACCGAUAGUGA-ACGU-ACCGUGAGGG--A-AAGGUG-AAAAGCACCCCAGG GGAGUGAAUAGUUCCUGAAACCUGCCUUUUGUAGAAUGAACCGGCGAGUAGCGAAAGCGA AGACCCGAAA--CCAAGUGACC-UA-CCCAUGGUC--------------------A-GG- AUG------AA--GU-----------GGAGGUCC-------------------------- -------GAAGUGAAAUUCCAAACGAACUUGGA-GAUAGCUGGUUCUCUCCGAAAGCCGG UAGAG-CUAAACUCCGAAU---------------------------------------UC GAAAG-GGAAACAGCCCAGAUCACCAGUUAAGGUCCCAAAUAAGUGA---------GACA ACUAGGAUGUUGGCUUAGAAGCAG---CCACAUUCAAAGAGUGCGUAAUAGCUCACUAGU CGAGUGCGCCGAAAAUUUACCGGGGCUA-AAUAGGAGAGCGUUGCCGUACCGCAAACCGA CACAGGUAGC-------------------------------------UAAGGUAA-GGAA CUCGG-------CAAAA-UGACC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGAAUAGGCC-CAGGCGACUGUUUA--UCAAAAACACAG-GUUUCUGCAAAAUCGU AAGUAUAG----GGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGGUAC----------- --------GAAUUGAAGCCCCAGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCCGC----------------------------------------ACGAA------ ------------------------------------AGGCGUAACGACUGUCUCAACACC CGCGACAG------------GACGGAAAGACCCCAUGGA-GCUUUACUGUAGCUUGAU-- -----------------------AUUGUGUA---CAGAAUAGGUAGGAGAGGACAGUGUC UGGCGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CUAAAAGGUA ACGGAGGCGCUCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUAGGACUUAGUGAUCCAAGGGCCAUCGCUCAA--CGGAU-----AAAAG CUACCCUGGGGAUAACA-GGCACAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUUGG CACCUCGAUGUCGGCUCAUCGCAUCCUGGGG-CU-GUAGUCGGUCCCAAG-GGUUGGGCU GUUCGCCCAUUAAAGCGGU---ACCCGAGCUGGGUUCAGAACGUCGUGAGACA-GUUCGG UCCCUAUCCGUCGCGGG-CGC-AGGAAAUUUGAGAGGAUAGUACGAGAGGACCGGAUAAA CGCUGAAAGCAUCUAAGUGUGAA--------------------- [48] 'Clostri_bo' GCGGCGGACGGGUGAGUAACACGUGGGUAACC-UGCCUCAAAGAG--UGGGAUAGCCUCC CGAAAGGGAGAUUAAUACCGCAUCGCUUUGAGAUGGACCCGCGGCGCAUUAGCUAGUUGG UGAGGUAACGGCUCACCAAGGCAACGAUGCGUAGCCGACCUGAGAGGGUGAUCGGCCACA UUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUNCGCAAU GGGGGAAACCCUGACGCAGCAACGCCGCGUGAGUGAGGAAGCCACGGCUAACUACG-UGC CAGCAGCCGCGGUAAUAC-GUAGGUGGCAAGCGUUGUCCGGAUUUACUGGGCGUAAAGA- GUAUGUAGGUGGU--GAC--------ACU-----GAG--AUACGAAA-GCGUGGGUAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGNNG-UAAACGAUGAGCAAACGCA--UUA AGCC-------G--CCUGGGAAGUA-CGGU----CGCAAGAUUAAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCAGCGGAGCAUGUGGUUUAAUUCGAA-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGGUGCAUGGUUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAAUCAUCAUGCCCC--------UUAUGGGGC-UAC-ACACGUGCUACAAUGGACAAC GA-GAGUUCGGAUUGUAGGCUGAAA---CUCGCCUACAUGAAGU-----------UGGAG UUGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGUCUUGUAC ACACCGCCCGUCACAC-CAUGAGAGUUG--GGGU-AAGUCGUAACAAGGUAGCCGUAGGA GAACCUGCGGCUGGAUCACCUCCUUUGGUGAAUGCCUUGGCCGAUGAAGGACGCGCGAUA AGCCGGGUAGACGUUUCCG-AAUGAGGAAAGAACUGAAA-CAUCUAAGUAC-CUGGAGGA AGAGAAA--GAAAAA---GAUUUUCUUAGU-AGCGGCGAGCGAACCAGAGUACCAAGGCU AAAUACUGACCGAUAGUGA-AGGU-ACCGUGAGGG--A-AAGGUG-AAAAGAACCCCAGG GGAGUGAAUAGAACCUGAAACCUGCUUUUUGUAGAACGAGCCAACGAGUAGGGAAACCGA AGACCCGAAA--CCGGGUGACC-UA-UCCAUGGCC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGAGAAACUCCAAUCGAACUCGGA-UAUAGCUGGUUCUCCUCGAAAGCGGG UAGAG-CCAAACUCCGAAU---------------------------------------AC AAAAG-GGAAACAGCCCAGAUCGUCAGCUAAGGUCCCAAAUAAGUGA---------GACA ACUAGGAUGUUGGCUUAGAAGCAG---CCACAUUAAAAGAGUGCGUAAUAGCUCACUAGU CAAGUGCGCCGAAAAUGUCCGGGGCUCA-AGUAGAGGAGCGUCGCCGUACCGCAAACCGA CACAGGUAGC-------------------------------------UAAGGCAA-GGAA CUAGG-------CAAAU-UGACC---C-CGUAACUUCGGGAGAAGGCAG----------- ----AGAAUAGGCA-CAAGCAACUGUUUA--ACAAAAACACAG-GUCUCUGCUAAAGCGA AAGUAUAG----GGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGGUGU----------- --------GAACUUAAGCCCCAGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCAG--------------------------------GUAAGUU CUGACCCGC----------------------------------------ACGAA------ ------------------------------------UGGCGUAAUGACUGUCUCAACACC CGCGAUUG------------GACGGAAAGACCCCGUAGA-GCUUUACUGUAGCUUAGC-- -----------------------AUUGUGUA---CAGGAUAGGUGGGAGAGGACAUUGUU AGGUGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CUAAAAAGUA ACGGAGGCGCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUCGGGCUUAGUGAUCCGAGGGCCAUCGCUCAA--CGGAU-----AAAAG CUACCUCGGGGAUAACA-GGCUGAUCUCCCCCAAGAGUUCACAUCGACGGGGAGGUUUGG CACCUCGAUGUCGGCUCGUCGCAUCCUGGGG-CU-GAAGUAGGUCCCAAG-GGUUGGGCU GUUCGCCCAUUAAAGCGGC---ACGCGAGCUGGGUUCAGAACGUCGUGAGACA-GUUCGG UCCCUAUCCGUCGCGGG-CGC-AGGAAAUUUGAGAAGAUAGUACGAGAGGACCGGAUAAA CGCUGAAAGCAUCUAAGCGUGAA--------------------- [49] 'Synecho_sp' GUGGCGGACGGGUGAGUAACACGUGAG-AACC-UACCUUCAGAAU--GGGGACAACAGUU GGAAACGACUGCUAAUACCCAAUCGUCUGAAGAUGGGCUCGCGUCUGAUUAGCUAGAUGG UGGGGUAAGAGCCUACCAUGGCAACGAUCAGUAGCUGGUCUGAGAGGAUGAGCAGCCACA CUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUUUUCCGCAAU GGGCGAAAGCCUGACGGAGCAAUACCGCGUGAGGGAAUAAGCAUCGGCUAACUCCG-UGC CAGCAGCCGCGGUAAUAC-GGAGGAUGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGC- GUCCGUAGGUGGU--GAC--------ACU-----GAG--GGACGAAA-GCUAGGGUAGCG AAAGGG-AUUAGAUACCCCUGUAGUCC--UAGCCG-UAAACGAUGAGCUAACGCG--UUA AGCC-------G--CCUGGGGAGUA-CGCA----CGCAAGUGUGAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGUAUGUGGUUUAAUUCGAU-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGGUGCAUGGCUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAGUCAUCAUGCCCC--------UUACGGGGC-UAC-ACACGUACUACAAUGGACAAC GG-GAGUUCAGAUUGCAGGCUGCAA---CUCGCCUGCAUGAAGG-----------AGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUUCGUUCCCGGGCCUUGUAC ACACCGCCCGUCACAC-CAUGGGAGCUG--GGGUGAAGUCGUAACAAGGUAGCCGUACCG GAAGGUGUGGCUGGAUCACCUCCUUUGGUGGAUACCUUGGGCGAAGAAGGACGUGCGAAA CGCCGGGGAGCUGUGUCCG-AAUGGGGCAAGAACUGAAA-CAUCUUAGUAG-CUAGAGGA AAAGAAA--ACAAAA---GAUUCUCCAAGU-AGCGGCGAGCGAACCCGAGUAGGAAGGCU AAAUACUGACCGAUAGCGU-AAGU-ACCGCGAGGG--A-AAGGUG-AAAAGAACCCCAGG GGAGUGAAUAGAACAUGAAACCUGCCUGUUGAAGAAUGAGCCGGCGACUAGUGAAAGCGA AGACCCGAAC--CCGGGUGAUC-UA-ACCAUGGCC--------------------A-GG- AUG------AA--GU-----------GGAGGUCC-------------------------- -------GAAGUGAAAUGCCAAUCGAACCCGGA-GCUAGCUGGUUCUCCCCGAAAGCGGG UAAAG-CCAAACUCAGAAU---------------------------------------AC GAAAG-GGAAACAGCCCAGACCACCAGCUAAGGUCCCCAAUAAGUGU---------GACA ACCAGGAGGUUUGCCUAGAAGCAG---CAACCUUAAAAGAGUGCGUAAUAGCUCACUGGU CAAGUGCGCCGAAAAUG-AACGGGGCUA-AGUAGGGGAGCGUUCCUGUACCCGAAACCGA CACAGGUAGC-------------------------------------UAAGGGAA-GGAA CUCGG-------CAAAA-UUACC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGAAUAGGCC-CAGGCGACUGUUUA--CCAAAAACACAG-GUCUCCGCAAAGUCGU AAGUAUGG----GGGCUGACGCCUGCCCAGUGCCGGAAGGUUAAGCUAG----------- --------CGACUGAAGCCCCGGUGAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCCGC----------------------------------------ACGAA------ ------------------------------------AGGCGUAACGACUGUCUCGGACCC UGCACCUG------------GACAGAAAGACCCUAUGAA-GCUUUACUGUAGCUUGGA-- -----------------------AUUGUGCG---CAGGAUAGGUGGGAGAGGACAAUUUC AGGUGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CUAAAAGGUA ACGGAGGCGCGCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUCGGCUUUAGUGAUCCAAGGGCCGUCGCUCAA--CGGAU-----AAAAG UUACUCUAGGGAUAACA-GGCUGAUCUCCGCCAAGAGUUCACAUCGACGCGGAGGUUUGG CACCUCGAUGUCGGCUCAUCGCAACCUGGGG-CG-GUAGUACGUCCCAAG-GGUUGGGCU GUUCGCCCAUUAAAGCGGU---ACGUGAGCUGGGUUCAGAACGUCGUGAGACA-GUUCGG UCCAUAUCCGGUGUAGG-CGU-AAGAGUAUUGAGAGGAUAGUACGAGAGGACCGGAUAAC CGCUGAAAGCAUCUAAGUGGGAA--------------------- [50] 'Mycobac_le' GUGGCGAACGGGUGAGUAACACGUGGGUAAUC-UGCCCUGCACUU--CGGGAUAAGCUUG GGAAACUGGGUCUAAUACCGGAUCGGUGCAGGAUGGGCCCGCGGCCUAUCAGCUUGUUGG UGGGGUGACGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGUGUCCGGCCACA CUGGGACUGAGAUACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAU GGGCGCAAGCCUGAUGCAGCGACGCCGCGUGGGGGAAGAAGCACCGGCCAACUACG-UGC CAGCAGCCGCGGUAAUAC-GUAGGGUGCGAGCGUUGUCCGGAAUUACUGGGCGUAAAGA- GCUCGUAGGUGGU--GAC--------GCU-----GAG--GAGCGAAA-GCGUGGGGAGCA AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCG-UAAACGGUGAGCUAACGCA--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGCUAAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGCGGAGCAUGUGGAUUAAUUCGAU-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----GCA------GGUGGUGCAUGGCUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGAUGACGU-- -CAAGUCAUCAUGCCCC--------UUAUGGGGC-UUC-ACACAUGCUACAAUGGACAAA GG-GAGUUCGGAUCGGGGUCUGCAA---CUCGACCCCGUGAAGU-----------CGGAG UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACGU-CAUGAAAGUUG--GGACGAAGUCGUAACAAGGUAGCCGUACCG GAAGGUGCGGCUGGAUCACCUCCUUUGGUGGAUGCCUUGGCCGAUGAAGGACGUGCGAUA UGCCGGGGAGCUGUUUCCG-AAUGGGGAAAGAAGUGAAA-CAUCUCAGUAC-CCGUAGGA GAAGAAA--ACAAUU---GAUUCCGCAAGU-AGUGGCGAGCGAACCCGAGUAGCAAGCCU AAAUACUGACCGAUAGCGG-AUGU-ACCGUGAGGG--A-AUGGUG-AAAAGUACCCCAGG GGAGUGAAUAGUACCUGAAACCUGCUUUUUGAAGAAUGAGCCUGCGAGUAGCGAAAGCGA GGACCCGAAG--CGGAGUGAUC-UA-CCCAUGGCC--------------------A-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------GAAGUGAAAGGCCAAUCAAACUCCGU-GAUAGCUGGUUCUCCCCGAAAGCGGG UAGAG-CCAAACUCCGAAU---------------------------------------GC GAAAG-GGAAACAGCCCAGAUCGCCGGCUAAGGCCCCUAAUAAGUGA---------GACA ACCAGGAGGUUGGCUUAGAAGCAG---CCACCUUGAAAGAGUGCGUAAUAGCUCACUGGU CAAGUGCGCCGAUAAUGUAGCGGGGCUA-AGUAGGGGAGCGUUCCCGUACCCCAAACCGA CACAGGUGGC-------------------------------------CAAGGCAA-GGAA CUCGG-------CAAAA-UGCCU---C-CGUAACUUCGGGAGAAGGCAG----------- ----AGACCAGUGA-GAAGCGACUGUUUA--CUAAAAACACAG-GUCCGUGCGAAGUCGU AAGUAUAC----GGACUGACGCCUGCCCGGUGCUGGAAGGUUAAGCGGA----------- --------GAAUUUAAGCCCCAGUAAACGGCGGUGGUAACU------AUAACCAUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------ACGAA------ ------------------------------------UGGCGUAACGACUGUCUCAACACG UGCGGCAG------------GACGAAAAGACCCCG-GGA-CCUUCACUACAACUUGGU-- -----------------------AUUGUGUG---UAGGAUAGGUGGGAGAGGACAGUGCC UGGCGGGUA--GUUUAAC-UGGGGCG---------------------------------- --------------------------------------GU-UGCCU-C--CUAAAAUGUA ACGGAGGCGCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUCGGGAUUAGUGAUCCAAGGGGUGUCGCUCAA--CGGAU-----AAAAG GUACCCCGGGGAUAACA-GGCUGAUCUUCCCCAAGAGUCCAUAUCGACGGGAUGGUUUGG CACCUCGAUGUCGGCUCGUCGCAUCCUGGGG-CU-GAAGCAGGUCCCAAG-GGUUGGGCU GUUCGCCCAUUAAAGCGGC---ACGCGAGCUGGGUUUAGAACGUCGUGAGACA-GUUCGG UCUCUAUCCGCCGCGCG-CGU-CAGAAACUUGAGGAAAUAGUACGAGAGGACCGGAUAAC CGCUGAAAGCAUCUAAGCGGGAA--------------------- [51] 'Strepto_co' GUGGCGAACGGGUGAGUAACACGUGGGCAAUC-UGCCCUUCACUC--UGGGACAAGCCCU GGAAACGGGGUCUAAUACCGGAUCGGUGAAGGAUGAGCCCGCGGCCUAUCAGCUUGUUGG UGAGGUAAUGGCUCACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGCGACCGGCCACA CUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAU GGGCGAAAGCCUGAUGCAGCGACGCCGCGUGAGGGAAGAAGCGCCGGCUAACUACG-UGC CAGCAGCCGCGGUAAUAC-GUAGGGCGCAAGCGUUGUCCGGAAUUAUUGGGCGUAAAGA- GCUCGUAGGCGGU--GAC--------GCU-----GAG--GAGCGAAA-GCGUGGGGAGCG AACAGG-AUUAGAUACCCUGGUAGUCC--ACGCCG-UAAACGGUGAGCUAACGCA--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGCUAAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGCGGAGCAUGUGGCUUAAUUCGAC-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGGUGCAUGGCUGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGUGGGGACGACGU-- -CAAGUCAUCAUGCCCC--------UUAUGGGGC-UGC-ACACGUGCUACAAUGGACAAU GA-GAGUUCGGAUUGGGGUCUGCAA---CUCGACCCCAUGAAGU-----------CGGAG UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACGU-CACGAAAGUUG--GGACGAAGUCGUAACAAGGUAGCCGUACCG GAAGGUGCGGCUGGAUCACCUCCUUUGGUGGAUGCCUUGGCCGAUGAAGGACGUGCGAUA GGCCGGGGAGUCGUGUCCG-AAUGGGGAAAGAAGUGAAA-CAUCUCAGUAC-CCGCAGGA AGAGAAA--ACAACC---GAUUCCGGGAGU-AGUGGCGAGCGAACCCAAGUAGCAAGCCU AAAUAUUGACCGAUAGCGG-AUGU-ACCGUGAGGG--A-AUGGUG-AAAAGUACCGCAGC GGAGUGAAUAGUACCUGAAACCUGCCUUUUGAAGAAUGAGCCUGCGAGUAGCGAAAGCGA AGACCCGAAG--CGGAGUGAUC-UA-GCCAUGGGC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGUGAAAGGCCAAUCAAACUCCGU-GAUAGCUGGUUCUCCCCGAAAGCGGG UAGAG-CCAAACUCCGAAU---------------------------------------GC GAGAG-GGAAACAGCCCAGAGCAUCGACUAAGGCCCCUAAUAAGUGA---------GACA ACCAGGAGGUUGGCUUAGAAGCAG---CCACCUUGAAAGAGUGCGUAAUAGCUCACUGGU CUAGCGCGCCGACAAUGUAGCGGGGCUA-AGUAGGGGAGCGUCGCCGUACCCUAAACCGA CUCAGGUGGC-------------------------------------CGAGGCAA-GGAA CUCGG-------CAAAA-UGCCC---C-CGUAACUUCGGGAGAAGGCAG----------- ----AGACCAGCGA-GAAGCGACUGUUUA--CUAAAAACACAG-GUCCGUGCGAAGCCGU AAGUAUAC----GGACUGACGCCUGCCCGGUGCUGGAACGUUAAGCUGA----------- --------GAACUUAAGCGCCAGUAAACGGCGGUGGUAACU------AUAACCAUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------ACGAA------ ------------------------------------UGGCGUAACGACUGUCUCAACUCG CGCAGCAG------------GACGGAAAGACCCCG-GGA-CCUUUACUACAGUUUGAU-- -----------------------AUUGUGUG---UAGGAUAGCUGGGAGAGGACAGUGUC UGAUGGGUA--GUUUAAC-UGGGGCG---------------------------------- --------------------------------------GU-UGCCU-C--CUAAAGAGUA ACGGAGGCGCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUCGGGACUAGUGAUCCAAGCGCCGUCGCUCAA--CGGAU-----AAAAG GUACCCCGGGGAUAACA-GGCUGAUCUUCCCCAAGAGUCCAUAUCGACGGGAUGGUUUGG CACCUCGAUGUCGGCUCGUCGCAUCCUGGGG-CU-GGAGUCGGUCCCAAG-GGUUGGGCU GUUCGCCCAUUAAAGCGGU---ACGCGAGCUGGGUUUAGAACGUCGUGAGACA-GUUCGG UCCCUAUCCGCUGUGCG-CGU-AGGAGUCUUGAGAAGGUAGUACGAGAGGACCGGAUAAC CGCUGAAAGCAUCUAAGCGGGAA--------------------- [52] 'Pirellu_ma' GCGGCGAAAGGGAGAGUAACAGGUGGUUUAUC-UACCCUCGGGUU--UGGGAUAGCGUCG GGAAACUGGCGGUAAUACCAAAUCGCCCGGGGAUGAGACUGCUCACUAUUAGCUUGUUGG UGGGGUAAUGGCCUACCAAGGCGACGAUGGUUAGCGGGCGUGAGAGCGUGGCCCGUCUCA CUGGGACUGAGAUACUGCCCAGACACCUACGGGUGGCUGCAGUC--GAGUCUUUGGCAAU GGGCGCAA-CGUGACCAAGCGAUGCCGCGUGCG-GAGGAAGGACGGGCUAAGUUCG-UGC CAGCAGCCGCGGUAAGAC-GAACCGUCGGAACGUUAUUCGGAAUUACUGGGCUUAAAGG- GUGCGUAGGCGGU--GAC--------GCU-----GAG--GCACGAAA-GCUAGGGGAGCG AACGGG-AUUAGAUACCCCGGUAGUCC--UAGCUG-UAAACGAUGAGCGAAAGUG--UUA AGCC-------G--CCUGGGGAGUA-UGGU----CGCAAGGCUGAAACUCAAA-GAAAUU GACG----GGGCUCAC-ACAA-GCGGUGGAGGAUGUGGCUUAAUUCGAG-GCUACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCUGUCGUCAGC-UCGUGUC-GU GAGAUGUCGGGUUA-AGUCCCUUAACGAGCGAAA-CCCGAGGAAGGCGGGGAUGACGU-- -CAAGUCCUCAUGGCCU--------UUAUGGGGC-UGC-ACACGUGCUACAAUGGACAAA GG-GAGUUCGGAUUGCAGGCUGCAA---CUCGCCUGCAUGAAGC-----------CGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUAUGUUCCUGAGCCUUGUAC ACACCGCCCGUCAAGC-CACGAAAGUUG--GGACUAAGUCGUAACAAGGUAGCCGUAGGG GAACCUGCGGCUGGAUCACCUCCUUUGGGGGAUGUCUUGGGCGAUGAAGGGCGUGCGAUA AGCGGGGGAGUUGUUCCUG-AAUG-----AGAACUGAAA-CAUCUCAGUAC-CUGGAGGA AGAGAAA--GAAAAC---GAUUUCGUCAGU-AGCGGCGAGCGAACCUGAGUAGGAAGGCU AAAUACUAACCGAUAGCGA-ACGU-AUGGCGACUG--A-AAGAUG-AGAAGAACCCCAGG GGAGGUAGU-GAACCUGAAACCUGCCUUUUGCAUAAUGAUCCGGCGAGUAGGGAAACCGA AGACGCGAAA--CCAAGUGAUC-UA-CCCAUGAGC--------------------A-GG- UUG------AA--GU-----------GGAGGACC-------------------------- -------GAAGUGAAAGUCUAAUCAAACUUGGA-GAUAUCUCGUUCUCUCCGAAAGCCGG UAGAG-ACAAACUCCGAAU---------------------------------------AC GAGAG-GGAAACAACCCAGACCGUCUGUUAAGGUCCCGAAUCAGUCU---------GACA ACCAGGAUGUUGGCUUAGAAGCAG---CCACAUUUAAAAAGUGCGUAACAGCUUACUGGU CGAGUGCGCCGAUAAUG-AUCGGGAGUA-AGUAGGAGAGCGCCGCCGUACUA-AAACUGA CACAGGUAGC-------------------------------------CAAGGCAA-GGAA CUCUG-------CAAAA-UGACC---C-CGUAAGUUCGCGAUAAGGCAG----------- ----AAAAUCGGCU-CUGGCGACUGUUUA--UCAAAAACACAG-GACCCUGCUAACUCGC AAGUAUAG----GGUCUGACGCCUGCCCGGUGCCGGUAGGUUAAGCUCG----------- --------CGACCGAAGCCCCGGUAAACGGCGGCCGUAACU------AUGACGGUCCUAA GGUAGCGAAGUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------AUGAA------ ------------------------------------AGGCGUAACGACUGUCUCAAUACC CGCAGUUA------------GACGGAAAGACCCCGUGAA-CCUUUACUGUAGGCUGAU-- -----------------------AUUGUGUG---UAGGAUAGGUGGGAGGGAACAGUGUC AGUUGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CUCCU-C--CCAAAGAGUA ACGGAGGAGUGCAAUGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGUAGGUCAUAGUGAUCCAAGGGCUAUCGCUCAU--CAGAU-----AAAAG GUACUCCGGGGAUAACA-GGCUUAUCGCAUCCGAGCGUCCAUAGCGGCGAUGCGGUUUGG CACCUCGAUGUCGGCUCAUCACAUCCUGGGG-GU-GAAGAAGCUCCCAAG-GGUUCGGCU GUUCGCCGAUUAAAGUGGU---ACGUGAGCUGGGUUCAGACCGUCGUGAGACA-GGUCGG UCCCUAUCUGCUGUGGG-CGU-ACGAAUUUUGAGGAGGUAGUACGAGAGGAUUUGAUAAA CGCUGAAAGCAUCUAAGCGUGAA--------------------- [53] 'Aquifex_ae' GCGGCAAACGGGUGAGUAACACGUGGGUAACC-UACCCCCAGGAG--GGGGAUAACCCCG GGAAACCGGGGCUAAUACCCCAUCGCCUGGGGAUGGGCCCGCGGCCCAUCAGGUAGUUGG UGGGGUAACGGCCCACCAAGCCUAUGACGGGUAGCCGGCCUGAGAGGGUGGCCGGCCACA GCGGGACUGAGACACGGCCCGCACCCCUACGGGGGGCAGCAGUGGGGAAUCGUGGGCAAU GGGCGAAAGCCUGACCCCGCGACGCCGCGUGGGGGAGGAAGGGACGGCUAACUACG-UGC CAGCAGCCGCGGUAAUAC-GUAGGUCCCAAGCGUUGCGCGAAGUCACUGGGCGUAAAGC- GUCCGCAGCCGGU--GAC--------GGU-----CAG--GGACGAAA-GCCGGGGGAGCA AACCGG-AUUAGAUACCCGGGUAGUCC--CGGCCG-UAAACCAUGAGCUAACGCG--UUA AGCC-------G--CCUGGGGAGUA-CGGG----CGCAAGCCUGAAACUCAAA-GGAAUU GGCG----GGGCCCGC-ACAA-CCGGUGGAGCGUCUGGUUCAAUUCGAU-GCUAAC--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGGUGCAUGGCCGUCGUCAGC-UCGUGUC-GU GAGAUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGGGGGGAUGACGU-- -CAGGUCAGUAUGCCCU--------UUAUGGGGC-CAC-ACAGGCGCUACAGUGGACAAU GG-GGGUGCGGAUUGGGGGCUGAAA---CUCGCCCCCAUGAAGC-----------CGGAA UCGG---------------UAGUAACGGC----CCGUGAAUACGUUCUCGGGCCUUGCAC ACACCGCCCGUCACGC-CACGGAAGCUG--GGGCGAAGUCGUAACAAGGUAGCCGUAGGG GAACCUGCGGCUGGAUCACCUCCUUUGGUGGAUGCCUCGGCCGAUGAAGGGCGUGCGAUA AGCGGUGGAGGCGUGCCCG-AAUGGGGAAAGAAGCAAAA-CCUUUUAGUAG-GCCGAGGA AAGGAAA--UCAAUU---GACGCCCUGAGU-AGCGGCGAGCGAACCCAAGUACCAAGGCU AAGUACUGACCGAUAGCGC-AUGU-ACCGUGAGGG--A-AAGGUG-AAAAGAACCCCCGG GGAGUGAAUAGAACCUGAAACCUGCCUUUUGCAGAAUGAGCCGGGGAGUAGCGAAAGCGA AGACGCGAAG--CCGGGCGAUC-UA-CCCUUGCCC--------------------U-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------UAAGUGAAAAGCCAAUCGCGCCCGGG-GAUAGCUCGUUCUCCCCGAAAGCGGG UAGAG-CCAAACUCCGAAU---------------------------------------GC AAGAG-GGAAACAGCCCAGACCGCCGGCUAAGGCCCCAAAUAAGUGA---------GACA GCCGGGAGGUUGGCUUAGAGGCAG---CCACCUUUAAACAGUGCGUAACAGCUGACCGGU CGAGGGCGCCGAAAAUUUAGCGGGGCUA-AGUAGGGGAGCGUUCCCGUACCGGAAACCGA CACAGGUGGC-------------------------------------UAAGGCAA-GGAA CUCGG-------CAAGU-UGGCC---C-CGUACCUUCGGAAGAAGGCAG----------- ----UGACAGGGCG-GUGCCGACUGUUUA--CCAAAAACACAG-GACUACGCAAACCCGA AAGUAUGU----GGUCUGAAGCCUGGCCAGUGCCCGAAGGUGAAGCUGG----------- --------GGGCUGAAGCCCGGGUAAACGCCGGCCGUAACU------AUGACGGUCCUAA GGUAGCGAAAUUCCUUGCCGG--------------------------------GUAAGUU CCGGCCUGC----------------------------------------AUGAA------ ------------------------------------UGGCCCAACGACUGUCUCGAGACC CGCGGCAG------------GACGGAAAGACCCCGUGAA-GCUUCACUGCAGCCUGGC-- -----------------------AUUGUGCG---CAGGAUAGGUGGGAGCGGACAGUGCU AGGUGGGCA--GUUUAGC-UGGGGCG---------------------------------- --------------------------------------GC-UGCCU-C--CUAAAGAGUA ACGGAGGCGCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCGGGGCCUAGUGACCCGAGGGCGGGUGAUCAG--CGGAU-----AAAAG CUACUCCGGGGAUAACA-GGCUAAUCGCCCCCGAGAGCCCACAUCGACGGGGCGGUUUGG UACCUCGAUGUCGGCUCCCCCCAUCCUGGGG-CU-GAAGCAGGUCCCAAG-GGUUGGGCU GUUCGCCCAUUAAAGGGGG---ACGCGAGCUGGGUUCAGAACGUCGCGAGACA-GUUCGG UCCCUAUCCGCCGCGGG-CGC-AGGAGCCUUGAGGGGGUAGUACGAGAGGACCGGAUAAG CGCUGAAAGCAUCUAAGCGCGAA--------------------- [54] 'Thermus_th' GCGGCGGACGGGUGAGUAACGCGUGGGUGACC-UACCCGGAAGAG--GGGGACAACCCGG GGAAACUCGGGCUAAUCCCCCAUCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCUAGUUGG UGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAUGGCCGGCCACA GGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUCCGCAAU GGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAGGUAAUAGCGCCGGCCAACUCCG-UGC CAGCAGCCGCGGUAAUAC-GGAGGGCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGG- GCGUGUAGGCGGU--GAC--------GCU-----GAG--GCGCGAAA-GCGUGGGGAGCA AACCGG-AUUAGAUACCCGGGUAGUCC--ACGCCC-UAAACGAUGAGCUAACGCG--UUA AGCC-------G--CCUGGGGAGUA-CGGC----CGCAAGGCUGAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAA-GCAACG--CG AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGCUGCAUGGCCGUCGUCAGC-UCGUGCC-GU GAGGUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGAGGGGACGACGU-- -CUGGUCAGCAUGGCCC--------UUACGGGGC-GAC-ACACGUGCUACAAUGCACAAA GC-GAGUUCGGAUUGGGGUCUGCAA---CCCGACCCCAUGAAGC-----------CGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACGC-CAUGGGAGCUG--GGGCGAAGUCGUAACAAGGUAGCUGUACCG GAAGGUGCGGCUGGAUCACCUCCUUUGGUGGAUGCCUCGGCCGAUGAAGGACGUGCGAUA AGCGGGGGAGCCGUGUCCG-AAUGGGGGAAGAACUGAAA-CAUCUCAGUAC-CCAGAGGA GAGGAAA--GAGAAA---GACUCCCUGAGU-AGCGGCGAGCGAACCCGAGUACCAAGGCU AAGUACUGACCGAUAGCGC-ACGU-ACCGUGAGGG--A-AAGGUG-AAAAGAACCCCGAG GGAGUGAAUAGAGCCUGAAACCUGCCUAUUGAAGCAUGAGCCGGCGACUAGGGAAACCGA GGACCCGAAA--CCGGGCGAGC-UA-GCCCUGGCC--------------------A-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------GAAGUGAAAAGCUAACCGAGCCCGGA-GAUAGCUGGUUCUCCCCGAAAGCCUG UAGAG-CCAAACUCCGAAG---------------------------------------GG GAGCGCGGGAACAACCGAGACCGCCAGCUAAGGCCCCCAAUAAGUGA---------GACA GCCAGGAGGUUGGCUUAGAAGCAG---CCACCUUUAAAGAGUGCGUAAUAGCUCACUGGU CGAGCGCGCCGAAAAUGAUGCGGGGCUA-AGUAGGGGAGCGUUCCCGUACCGCAAACCGA CACAGGUGGC-------------------------------------UCAGGCAA-GGAA CUCUG-------CAAGU-UGGCC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGAACAGGCU-CUGGCGACUGUUUA--CCAAAAACACAG-CUCUCUGCGAACUCGU AAGUAUAG----GGAGCGACGCUUGCCCGGUGCCGGAAGGUCAAGCCCC----------- --------GAACCGAAGCCCCGGUGAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------ACGAA------ ------------------------------------AAGCGUAACGACUGUCUCGGCACC CGUGGCAG------------GACGAAAAGACCCCGUGGA-GCUUUACUGCAGCCUGGU-- -----------------------GUUGUGCG---UAGGAUAGGUGGGAGCGGACAGCGCU UGGCGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CGCCU-C--CUAAAAGGUA ACGGAGGCGCCCAAAGGUC----------------------------------------- ------------------------------------------------------------ ------GAAAGCCGGGCCUAGUGAACCAAGGGCCAUCGAUCAA--CGGAU-----AAAAG UUACCCCGGGGAUAACA-GGCUGAUCUCCCCCGAGCGUCCACAGCGGCGGGGAGGUUUGG CACCUCGAUGUCGGCUCGUCGCAUCCUGGGG-CU-GAAGAAGGUCCCAAG-GGUUGGGCU GUUCGCCCAUUAAAGCGGC---ACGCGAGCUGGGUUCAGAACGUCGUGAGACA-GUUCGG UCUCUAUCCGCCACGGG-CGC-AGGAGGCUUGAGGGGGUAGUACGAGAGGACCGGAUAAC CGCUGAAAGCAUCUAAGCGGGAA--------------------- [55] 'Thermot_ma' GCGGCGGACGGGUGAGUAACACGUGGGUAACC-UGCCCUCCGGAG--GGGGAUAACCAGG GGAAACCCUGGCUAAUACCCCAUCGCCGGAGGAGGGGCCCGCGGCCCAUCAGGUAGUUGG UGGGGUAACGGCCCACCAAGCCGACGACGGGUAGCCGGCCUGAGAGGGUGGUCGGCCACA GGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUGGGGAAUCUUGGACAAU GGGGGAAACCCUGAUCCAGCGACGCCGCGUGCGGGAGAAAGCCCCGGCUAACUACG-UGC CAGCAGCCGCGGUAAUAC-GUAGGGGGCAAGCGUUACCCGGAUUUACUGGGCGUAAAGG- GGGCGUAGGCGGC--GAC--------GCU-----GAG--GCCCGAAA-GCCAGGGGAGCA AACCGG-AUUAGAUACCCGGGUAGUCC--UGGCUG-UAAACGAUGAGCUAACGCG--UUA AGCC-------G--CCUGGGGAGUA-CGCC----CGCAAGGGUGAAACUCAAA-GGAAUU GACG----GGGCCCGC-ACAA-GCGGUGGAGCGUGUGGUUUAAUUGGAU-GCUAAG--CC AAGAACCUUACCUU---------------------------------------------- --------GACA-----ACA------GGUGGUGCACGGCCGUCGUCAGC-UCGUGCC-GU GAGGUGUUGGGUUA-AGUCCCGCAACGAGCGCAA-CCCGAGGAAGGAGGGGAUGACGU-- -CAGGUACUCGUGCCCC--------UUAUGGGGC-GAC-ACACGCGCUACAAUGGACAAU GG-GAGUUCGGAUCGCAGGCUGCAA---CCCGCCUGCGUGAAGC-----------CGGAA UCGC---------------UAGUAAUCGG----CGGUGAAUACGUUCCCGGGCCUUGUAC ACACCGCCCGUCACGC-CACCCGAGGGG--GGGCGAAGUCGUAACAAGGUAGCCGUACCG GAAGGUGCGGCUGGAUCACCUCCUUUGGUGGAUGCCUUGGGCGAUGAAGGGCGUGCGAUA AGCGGGGGAGCCGUUCCCG-AAUGGGGAAAGAAGUGAAA-CAUCUCAGUAC-CCCGAGGA AAAGAAA--UCAACC---GAUUCCCCUAGU-AGCGGCGAGCGAACCCGAGUACCAAGGCU AAAUACUGUCCGAUAGCGC-ACGU-ACCGUGAGGG--A-AAGGUG-AAAAGCACCCCAGG GGAGUGAAGAGGACCUGAAACCUGCCUUUUGAUUAAUGAGCCCGCGAGUAGCGAAAGCGA AGACCCGAAG--CCGGGUGAGC-UA-CCCCUGGGC--------------------A-GG- GUG------AA--GU-----------GGAGGCCC-------------------------- -------GAAGUGAAAAGCUAACCGAACCCGGU-GAUAGCUGGUUCUCCCCGAAAGCCGG UAGAG-CCAAACUCCGAAU---------------------------------------CC GAGAG-GGGAACAACCCAGACCGCCGGCUAAGGGCCCGAAUAAGUGA---------GACA GCUGGGAUGUUGGCUUAGAAGCAG---CCACAUUUAAAGAGUGCGUAACAGCUCACCAGC CGAGUGCACCGAAAAUGUAACGGGGCUA-AGUAGGGGAGCUUUCCCGUUCCGCAAACCGA CACAGGUGGC-------------------------------------UCAGGGAA-GGAA CUCGG-------CAAAU-UGGCC---C-CGUAACUUCGGGAGAAGGCAG----------- ----UGACAAGGCC-CUGGCGACUGUUUA--CCAAAAACACAG-GUCUCUGCUAACUCGA AAGUAUAG----GGACUGACGCCUGCCCAGUGCCGGAAGGUUAAGCUCC----------- --------GACCCGAAGCCCCGGUAAACGGCGGCCGUAACU------AUAACGGUCCUAA GGUAGCGAAAUUCCUUGUCGG--------------------------------GUAAGUU CCGACCUGC----------------------------------------AUGAA------ ------------------------------------UGGCGUAACGACUGUCUCGGCACC CGCGGCUA------------GACGGAAAGACCCCGUGGA-GCUUUACUGCAGCCUGGU-- -----------------------AUUGUGUA---UAGCAUAGGUGGGAGGGGACAGUGCC AGGUGGGCA--GUUUGAC-UGGGGCG---------------------------------- --------------------------------------GU-CACCU-C--CUAAAAGGUA ACGGAGGUGUGCAAAGGUG----------------------------------------- ------------------------------------------------------------ ------GAAACCCGGCCCUAGUGACCCAAGGGCCGUCGAUCAA--CGGAU-----AAAAG UUACCCCGGGGAUAACA-GGCUGGUCCCGCCCGAGAGUUCACAUCGACGGCGGGGUUCGG CACCUCGAUGUCGGCUCAUCCCAUCCUGGGG-CU-GAAGCAGGUCCCAAG-GGUUGGGCU GUUCGCCCAUUAAAGGGGU---ACGUGAGCUGGGUUCAGACCGUCGUGAGACA-GGUCGG UCCCUAUCUGCCGCGGG-CGU-AGGAGGCUUGAGGGGGUUGUACGAGAGGACCGGAUAAC CGCUGAAAGCAUCUAAGCGGGAA--------------------- [56] 'Deinoco_ra' GTGGCGCACGGGTGAGTAACACGTAACTGACC-TACCCAGAAGTC--ACGAATAACTGGC CGAAAGGTCCGCTAATACGTGATCGCTTCTGGATGGGGTTGCGTTCCATCAGCTGGTTGG TGGGGTAAAGGCCTACCAAGGCGACGACGGATAGCCGGCCTGAGAGGGTGGCCGGCCACA GGGGCACTGAGACACGGGTCCCACTCCTACGGGAGGCAGCAGTTAGGAATCTTCCACAAT GGGCGCAAGCCTGATGGAGCGACGCCGCGTGAGGGTAATAGCACCGGCTAACTCCG-TGC CAGCAGCCGCGGTAATAC-GGAGGGTGCAAGCGTTACCCGGAATCACTGGGCGTAAAGG- GCGTGTAGGCGGT--GAC--------GCT-----GAG--GCGCGAAA-GTGTGGGGAGCA AACCGG-ATTAGATACCCGGGTAGTCC--ACACCC-TAAACGATGAGCTAACGCG--ATA AACC-------G--CCTGGGAAGTA-CGGC----CGCAAGGTTGAAACTCAAA-GGAATT GACG----GGGCCCGC-ACAA-GCGGTGGAGCATGTGGTTTAATTCGAA-GCAACG--CG AAGAACCTTACCTT---------------------------------------------- --------GACA-----ACA------GGTGCTGCATGGCTGTCGTCAGC-TCGTGTC-GT GAGATGTTGGGTTA-AGTCCCGCAACGAGCGCAA-CCCGAGGAAGGCGGGGATGACGT-- -CTAGTCAGCATGGTCC--------TTACGGGGC-GAC-ACACGTGCTACAATGGACAAC GC-GAGTTCAGATCGGAGTCTGCAA---CTCGACTCCGTGAAGT-----------TGGAA TCGC---------------TAGTAATCGG----CGGTGAATACGTTCCCGGGCCTTGTAC ACACCGCCCGTCACAC-CATGGGAGCTG--GGGTGAAGTCGTAACAAGGTAACTGTACCG GAAGGTGCGGTTGGATCACCTCCTTT---------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------ACC CGTAGCAG------------GACGAAAAGACCCCGTGGA-GCTTTACTATAGTCTGGC-- -----------------------ATTGTGCG---TAGGATAGGTGGGAGCGGACCGTGCT TGGCGGGTA--GTTTGAC-TGGGGCG---------------------------------- --------------------------------------GT-CGCCT-C--CCAAAATGTA ACGGAGGCGCCCAAAGGTG----------------------------------------- ------------------------------------------------------------ ------GAAACTCGGGCTTAGTGAACCAAGGGCCATCGATCAA--CGGAT-----AAAAG TTACCCCGGGGATAACA-GGCTGATCTCCCCCGAGAGTCCATATCGGCGGGGAGGTTTGG CACCTCGATGTCGGCTCGTCGCATCCTGGGG-CT-GAAGAAGGTCCCAAG-GGTTGGGCT GTTCGCCCATTAAAGCGGC---ACGCGAGCTGGGTTCAGAACGTCGTGAGACA-GTTCGG TCTCTATCCGCTACGGG-CGC-AGGAGAATTGAGGGGATAGTACGAGAGGACCGGATAAC CGCTGAAAGCATCTAAGCGGGAA--------------------- [57] 'Guillar_th' -------------------GGGGGCACCCGUA-CUCCGUUGUC-A--GAGGUGAAAUUCA UGGAUUAACGGAAGACGAACAACUGCGAAAGCAUCUGCCAAGGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUGAU-----CAA--GAACGAAA-GUUAGGGGAUCG AAGACG-AUUAGAUACCGUCGUAGUCU--UA--ACCAUAAACUAUGCCAACUGGGGAUUG GUAGAUC-------UGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGCGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAACCUU-ACCAGGUCCGGACAUAGGGAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGGUUA-AUUCCGUUAA-CGAGCGAGACCUUGACC-UGCUAAUUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUCCUGGGC-CGC-ACGCGCGCUACAAU------- --------------------------------------GGAACG-----------AGGAA UGCCUUGUAA-GCGCGAGUCAUCAACUCG----CGCUGAAUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUCAAUAG-ACGGAGGA AAAGAAACUAACCAG---GAUUCCCUUAGU-AGCGGCGAGCGAAUCGAGGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGCGAGGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAGCAGGAUGAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGUCCGAAGGCGUUCUGACGUGCAAAUCGA-UGCUCAGACUU GGGUAUAGGGGCGAAAGACCAAUCGAACCGUCU-AGUAGCUGGUUCCCUCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----GAAUGAUUAGAGGAAUAAGCA-G-AACUGGC GAUGC-GGGAUGAACCGAGAG---UGGUGUUAAGGCGCCCAACGUAGGUGCGUAUGGACA GCAGGACGGUGGUCA-UGGAGG-UCGACAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAACGCAU--CAGCCCUGAAAAUUA-GGAGGGCGUGAAGCCUU--UGGCGUGAGCCU -UGGUGGAGCA-GGCUCGAGUGCAGAUCUUGGUGGUAGU----AGCAAAAAUAAG-GGAA GUCGG-------CAAAA-UGGAU---C-CGUAACUUCGGGACAAGGAUUGGCUCUAACUG GUACGGACAAG-GGGAAUCCGACUGUUUAAUUAAAACAUAGCAUUGCGAUGGCCGGAAAU CGGUGUUGACGCAAUGUGAAUUCU-----GCCCAGUGCUCUGAAUGU----UAAUGUGAA GAAA---UUCAAGGAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUG A---A--CGAGAUUCCCACUGUCCCUACUUACCAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGAAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUUGACUCUAGUC----UG GUUUU------GUGGAAUGAGUCGAGAGGUG---UAGCAU-----------AAGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--CUAAAAGAUA ACGCAGG--UGUCCUAAGA-UG-AGCUCAGUGAGAACAGCAAUCUCAUGUGGA--GUAGA AGGGCAAAA--GCUCAUUUGAU--U-UG--GAUUU-UC-----AGUA-CGAA----UACA AACUGUGAAAGCAUGGCCUAUCGAUCCUUUAGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCGAGCGUUCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACAAAG-CGUUGGAUU GUUCACCCACUGACAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GUUGAUUCAGAUAAUUGG-UUAU GGCUGAACGCCUCUAAG--------------------------- [58] 'Oryza_sa' -------------------GGGGGCAUUCGUA-UUUCAUAGUC-A--GAGGUGAAAUUCU UGGAUUUAUGAAAGACGAACAACUGCGAAAGCAUUUGCCAAGGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUGGGGGCUCG AAGACG-AUCAGAUACCGUCCUAGUCU--CA--ACCAUAAACGAUGCCGACCAGGGAUCG GCGGAUC-------CGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGCGUGGGGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUU-ACCAGGUCCAGACAUAGCAAGGAUUGACAGA---CUGAGA-GCUCUUUCU UGAU--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GC GAUUUGUCUGGUUA-AUUCCGUUAA-CGAACGAGACCUCAGCC-UGCUAACUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUUCUGGGC--GC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UGCCUAGUAA-GCGCGAGUCAUCAGCUCG----CGUUGACUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUAAAUAA-GCGGAGGA GAAGAAACUUACGAG---GAUUCCCCUAGU-AACGGCGAGCGAACCGGAGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGCGAGGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAGCGGGGCGAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGCUCGAAGCGAUACUGACGUGCAAAUCGU-UCGUCUGACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----CAAUGAUUAGAGGCAUAAGCA-G-AACUGGC GAUGC-GGGAUGAACCGGAAG---CCUGGUUACGGUGCCGAACGUUGGUCGAUUAAGACA GCAGGACGGUGGUCA-UGGAAG-UCGAAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUCAAC--UAGCCCCGAAAAUUA-GGAGGGCGCAAAACCCG--GGGCGCGAGCCC -GGGCGGAGCG-GCCGUCGGUGCAGAUCUUGGUGGUAGU----AGCAAAUACAAG-GGAA GUCGG-------CAAAA-CGGAU---C-CGUAACUUCGGGAAAAGGAUUGGCUCUAACUG GUACGGACAAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUGGUCCUCGCG -GAUGCG-ACGCAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUGUCUACUAUCCAGCGAAACCACAGCCAAGG-AAC GGGCUUGGCGGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----CG ACUUU------GUGAAAUGACUUGAGAGGUG---UAGGAU-----------AAGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUAAAAGAUA ACGCAGGG-UGUCCUAAGA-UG-AGCUCAACGAGAACAGAAAUCUCGUGUGGA--ACAAA AGGGUAAAA--GCUCGUUUGAU--U-CU--GAUUU-CC-----AGUA-CGAA----UACG AACCGUGAAAGCGUGGCCUAUCGAUCCUUUAGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACCAAG-UGUUGGAUU GUUCACCCACCAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GUUGAUUCACACAAUUGG-UUAU GACUGAACGCCUCUAAG--------------------------- [59] 'Arabido_th' -------------------GGGGGCAUUCGUA-UUUCAUAGUC-A--GAGGUGAAAUUCU UGGAUUUAUGAAAGACGAACAACUGCGAAAGCAUUUGCCAAGGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUGGGGGCUCG AAGACG-AUCAGAUACCGUCCUAGUCU--CA--ACCAUAAACGAUGCCGACCAGGGAUCA GCGGAUC-------CGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUU-ACCAGGUCCAGACAUAGUAAGGAUUGACAGA---CUGAGA-GCUCUUUCU UGAU--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GC GAUUUGUCUGGUUA-AUUCCGUUAA-UGAACGAGACCUCAGCC-UGCUAACUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUUCUGGGC-CGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCUAGUAA-GCGCGAGUCAUCAGCUCG----CGUUGACUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUCAAUAA-GCGGAGGA AAAGAAACUAACAAG---GAUUCCCUUAGU-AACGGCGAGCGAACCGGAGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGCGAGGUAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAGCGGGGUAAA----GCCAGAGGA-AA- CUC------UG--GUGGAAGCCCGCAGCGAUACUGACGUGCAAAUCGU-UCGUCUGACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCCCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----CAAUGAUUAGAGGCAUAAGCA-G-AACUGGC GAUGC-GGGAUGAACCGGAAG---CCGGGUUACGGUGCCCAACGUUGGUCGAUUAAGACA GCAGGACGGUGGUCA-UGGAAG-UCGAAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUCAAC--UAGCCCCGAAAAUUA-GGAGGGCGCAAAACCUA--GGGCGCGAGCCC -GGGCAGAGCG-GCCGUCGGUGCAGAUCUUGGUGGUAGU----AGCAAAUACAAG-GGAA GUCGG-------CAAAA-UGGAU---C-CGUAACUUCGGGAAAAGGAUUGGCUCUAACUG GUACGGACAAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUGGUCCCUGCG -GAUGCUAACGCAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAACCAAGCGCGGGUAAACGGUGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUGUCUACUAUCCAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----CG ACUUU------GUGAAAUGACUUGAGAGGUG---UAGGAU-----------AAGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUAAAAGAUA ACGCAGG--UGUCCUAAGA-UG-AGCUCAACGAGAACAGAAAUCUCGUGUGGA--ACAAA AGGGUAAAA--GCUUGUUUGAU--U-CU--GAUUU-UC-----AGUA-CGAA----UACG AACCGUGAAAGCGUGGCCUAUCGAUCCUUUAGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACCAAG-UGUUGGAUU GUUCACCCACCAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GUUGAUUCGCACAAUUGG-UUAU GACUGAACGCCUCUAAG--------------------------- [60] 'Acorus_gr' -------------------GGGGGCAUUCGUA-UUUCAUAGUC-A--GAGGUGAAAUUCU UGGAUUUAUGAAAGACGAACAACUGCGAAAGCAUUUGCCAAGGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUGGGGGAUCG AAGACG-AUCAGAUACCGUCCUAGUCU--CA--ACCAUAAACGAUGCCGACCAGGGAUCG GUGGAUC-------CGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUU-ACCAGGUCCAGACAUAGUAAGGAUUGACAGA---CUGAGA-GCUCUUUCU UGAU--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GC GAUUUGUCUGGUUA-AUUCCGUUAA-CGAACGAGACCUCAGCC-UGCUAACUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUUCUGGGC-CGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCUAGUAA-GCGCGAGUCAUCAGCUCG----CGUUGACUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUCAAUAA-GCGGAGGA GAAGAAACUUACGAG---GAUUCCCCUAGU-AACGGCGAGCGAAACGGAGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGCGAGGGAAGGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAGCGGGGCGAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGCCCGAAGCGUUACUGACGUGCAAAUCGU-UCGUCUGACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCGUCU-AGUAGCUGGUUCCCUCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----CAAUGAUUAGAGGCAUAAGCA-G-AACUGGC GAUGC-GGGAUGAACCGGAAG---CCGGGUUACGGUGCCCAACGUUGGUCGAUUAAGACA GCAGGACGGUGGUCA-UGGAAG-UCGAAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUCAAC--UAGCCCCGAAAAUUA-GGAGGGCGCGAAACCCC--GGGCGUGAGCAC -GGGCGGAGCG-GCCGUCGGUGCGGAUCUUGGUGGUAGU----AGCAAAUACAAG-GGAA GUCGG-------CAAAA-UGGAU---C-CGUAACCUCGGGAAAAGGAUUGGCUCUAACUG GUACGGACAAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUGGUCCCCGCG -GAUGCUCACGCAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUGUCUACUAUCCAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----CG ACUUU------GUGAAAUGACUUGAGAGGCG---UAGGAU-----------AAGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUAAAAGAUA ACGCAGG--UGUCCUAAGA-UG-AGCUCAACGAGAACAGAAAUCUCGUGUGGA--ACAAA AGGGUAAAA--GCUCGUUUGAU--U-CU--GAUUU-CC-----AGUA-CGAA----UACG AACCGUGAAAGCGUGGCCUAUCGAUCCUUUAGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACCAAG-UGUUGGAUU GUUCACCCACCAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GUUGAUUCACACAAUUGG-UUAU GACUGAACGCCUCUAAG--------------------------- [61] 'Hylocom_sp' -------------------GGGGGCAUUCGUA-UUUCAUUGUC-A--GAGGUGAAAUUCU UGGAUUUAUGAAAGACGAACUUCUGCGAAAGCAUUUGCCAAGGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUGGGGGCUCG AAGACG-AUCAGAUACCGUCCUAGUCU--CA--ACCAUAAACGAUGCCGACUAGGGAUUG GCGGGUC-------CGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUU-ACCAGGUCCAGACAUAGUAAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGGUUA-AUUCCGUUAA-CGAACGAGACCUCAGCC-UGCUAACUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUUCUGGGC-CGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCUAGUAA-GCGCGAGUCAUCAGCUCG----CGUUGACUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AU-------------------------- -----------------------------------------------AAGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGCGAGGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAGCAGGGCGAA----GC-AGAGGA-AA- CUC------UG--GUGGAGGCUCGUAGCGAUACUGACGUGCAAAUCGU-UCGUCAGACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----GAAUGAUUAGAGGCAUAAGCA-G-AACUGGC GAUGC-GGGAUGAACCGAAAG---CCGGGUUACGGUGCCAAAUGUUGAUUGAUUAAGACA GCAGGACGGUGGUCA-UGGAAG-UCGAAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUCAAC--UAGCCCCGAAAAUUA-GGAGGGCGUGCAGCUUU--GGGCGUGAGC-C -GAGUGAAACG-CCC-CUAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAA-CAGAU---C-CGUAACUUCGGGAAAAGGAUUGGCUCUAACUG GUACGGACAAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUGGUCCCUGCG -GAUGUUGACGCAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGAAAAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----CG ACUUU------GUGAAAUGACUUAAGAGGUG---UAGGAU-----------AAGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUAAAAGAUA ACGCAGG--UGUCCUAAGA-UG-AGCUCAACGAGAACAGAAAUCUCGUGUGGA--ACAAA AGGGUAAAA--GCUCAUUUGAU--U-UU--GAUUU-UC-----AGUA-CGAA----UACA AACUGUGAAAGCAUGGCCUAUCGAUCCUUUAGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACCAAG-UGUUGGAUU GUUCACCCACCAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GUUGAUUCACAUAAUUGG-UUAU GACUGAACGCCUCUAAG--------------------------- [62] 'Andreae_ni' -------------------GGGGGCAUUCGUA-UUUCAUUGUC-A--GAGGUGAAAUUCU UGGAUUUAUGAAAGACGAACUUCUGCGAAAGCAUUUGCCAAGGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUGGGGGCUCG AAGACG-AUCAGAUACCGUCCUAGUCU--CA--ACCAUAAACGAUGCCGACUAGGGAUUG GCGGAUC-------CGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUU-ACCAGGUCCAGACAUAGUAAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGGUUA-AUUCCGUUAA-CGAACGAGACCUCAGCC-UGCUAACUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUUCUGGGC-CGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCUAGUAA-GCGCGAGUCAUCAGCUCG----CGUUGACUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AU-------------------------- -----------------------------------------------AAGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGCGAGGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAGCAGGGCGAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGCUCGUAGCGAUACUGACGUGCAAAUCGU-UCGUCAGACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----GAAUGAUUAGAGGCAUAAGCA-G-AACUGGC GAUGC-GGGAUGAACCGAAAG---CCGGGUUACGGUGCCAAAUGUUGAUUGAUUAAGACA GCAGGACGGUGGUCA-UGGAAG-UCGAAAUCCGCUAAGGAGUGUGUAACAACUCG--CCU GCCGAAUCAAC--UAGCCCCGAAAAUUA-GGAGGGCGUGCAGCUUU--GGGCGUGAGC-C -GAGUGAAACG-CCUUCCAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAA-CAGAU---C-CGUAACUUCGGGAAAAGGAUUGGCUCUAACUG GUACGGACAAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUGGUCCCUACG -GAUGUUGACGCAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGAAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----CG ACUUU------GUGAAAUGACUUAAGAGGUG---UAGAAU-----------AAGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUAAAAGAUA ACGCAGG--UGUCCUAAGA-UG-AGCUCAACGAGAACAGAAAUCUCGUGUGGA--ACAAA AGGGUAAAA--GCUCAUUUGAU--U-UU--GAUUU-UC-----AGUA-CGAA----UACA AACUGUGAAAGCAUGGCCUAUCGAUCCUUUAGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACCAAG-UGUUGGAUU GUUCACCCACCAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GUUGAUUCACAUAAUUGG-UUAU GACUGAACGCCUCUAAG--------------------------- [63] 'Chlorel_el' -------------------GGGGGCAUUCGUA-UUUCAUUGUC-A--GAGGUGAAAUUCU UGGAUUUAUGAAAGACGAACUACUGCGAAAGCAUUUGCCAAGGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUGGGGGCUCG AAGACG-AUUAGAUACCGUCCUAGUCU--CA--ACCAUAAACGAUGCCGACUAGGGAUUG GUGGAUC-------CGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGCGUGGAACCUGCGGCUUAAUUUG-ACUCAACA--CG GGAAAACUU-ACCAGGUCCAGACAUAGUGAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGG-UU GCCUUGUCAGGUUG-AUUCCGGUAA-CGAACGAGACCUCAACC-UGCUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUUCUGGGC-CGC-ACGCGCGUUACACU------- --------------------------------------GAAACG-----------AGGAA UGCCUAGUAA-GCGCAAGUCAUCAGCUUG----CGUUGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUCAAUAA-GCGGAGGA AAAGAAACUAACCAG---GAUUCCCCUAGU-AACGGCGAGUGAACCGGGGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGUGAGGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAGCAGGGCGAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGCUCGUAGAUGUGCUGACGUGCAAAUCGC-UUUUCGGACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAGUUUCC CCC-AG-GAUAGCUGGGGUAAAG-C----GAAUGAUUAGAGGUAUAAGCA-G-AACUGGC GAUGC-GGGAUGAACCGAAAG---UCGAGUUAAGGUGCCCGACGUUGGUUGAUAUAGACA GCAGGACGGUGGUCA-UGGAAG-UCGAAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUCAAC--UAGCCUCGAAAAUUA-GGAGGGCGUGCAGCCUG--CGGCGUGAGCCG -GGGUGAAACA-GCACCUAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAA-UAGAU---C-CGUAACUUCGGGAAAAGGAUUGGCUCUAACUG GUACGGACAAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGUGAUGGUCCUAAAG -GAUGUUGACACAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGAAGAAACAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----CG ACUUU------GUGAAAUGACUUACGAGGUG---UAGAAU-----------AAGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUAAAAGAUA ACGCAGG--UGUCCUAAGA-UGGAGCUCAACGAGAACAGAAAUCUCGUGUGGA--ACAAA AGGGUAAAA--GCUCAUUUGAU--U-UU--GAUUU-UC-----AGUA-CGAA----UACA AACUGUGAAAGCAUGGCCUAUCGAUCCUUUAGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUGUGC-CC-GCAGCAGAGCACAAG-UGUCGGCUU GUUCACCCGCUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GCCGAUUCGGAUAAUUGG-UAAC CGCUGAACGCCUCUAAG--------------------------- [64] 'Cryptoc_ne' -------------------GGGGGCAUUGGUA-UUCCGUUGCU-A--GAGGUGAAAUUCU UAGAUUGACGGAAGACCAACAACUGCGAAAGCAUUUGCCAAGGACGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUGAU-----CAA--GAACGAAG-GUUAGGGGAUCA AAAACG-AUUAGAUACCGUUGUAGUCU--UA--ACAGUAAACGAUGCCGACUAGGGAUCG GCCCAUC-------UGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGUGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUC-ACCAGGUCCAGACAUAGUGAGGAUUGACAGA---UUGAUA-GCUCUUUCU UGAU--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGGUUA-AUUCCGAUAA-CGAACGAGACCUUAACC-UGCUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUUCUGGGC-CGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UACCUAGUAA-GCGUGAGUCACCAGCUCG----CGUUGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUACUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUCAAUAA-GCGGAGGA AAAGAAACUAACAAG---GAUUCCCUUAGU-AACGGCGAGUGAACCGGGAAGACCGA--- -----------UAGCGAAC-AAGU-ACCGUGAGGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAAUAGGGCGAA----GCCAGGGGA-AA- CUC------UG--GUGGAGGCUCGUAGCGAUUCUGACGUGCAAAUCGA-UCGUCGAAUUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCUGCCGAACUUUCC CUC-AG-GAUAGCAGAGGUAAAG-C----GAAUGAUUAGAGGCCUAAGCA-G-AACUGGC GAUGC-GGGAUGAACCGAUCG---UGAGGUUAAGGUGCCGGAAGUUAGUUCAUCUAGACA GCAGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUGAAC--UAGCCCUGAAAAUUA-GGCAGGCGUGAAGCCUA--GGCAGUGAUGUC -GGGUGGAACG-GCCUCUAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAA-UAGAU---C-CGUAACUUCGGGAUAAGGAUUGGCUCUAACUG GUACGGACAAG-GGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGCCAGAAAA UGGUGUUGACGCAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUU----UG ACAUU------GUGAAAAGACAUGGAGGGUG---UAGAAU-----------AAGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUAAAAGAUA ACGCAGG--UGUCCUAAGG-GG-GACUCAUGGAGAACAGAAAUCUCCAGUGGA--ACAAA AGGGUAAAA--GUCCCCUUGAU--U-UU--GAUUU-UC-----AGUG-UGAA----UACA AACCAUGAAAGUGUGGCCUAUCGAUCCUUUAGAGG-------U--GCCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUACCG-AA-GCAGAAUUCGGUAAG-CGUUGGAUU GUUCACCCACUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACU-------GCUCAUUCGUAUAAUUGG-UUAU GGCUGAACGCCUCUAAG--------------------------- [65] 'Candida_al' -------------------GGGGGUAUCAGUA-UUCAGAUGUCGA--AAGGUGAAAUUCU UGGAUUUACUGAAGACUAACUACUGCGAAAGCAUUUACCAAGGACGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUAGGGGAUCG AAGAUG-AUCAGAUACCGUCGUAGUCU--UA--ACCAUAAACUAUGCCGACUAGGGAUCG GUUGUUC-------UGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUC-ACCAGGUCCAGACACAAUAAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UUUGUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGCUUA-AUUGCGAUAA-CGAACGAGACCUUAACC-UACUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGACGUUCUGGGC-CGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCUAGUAA-GCGCAAGUCAUCAGCUUG----CGUUGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUACUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUCAAUAA-GCGGAGGA AAAGAAACCAACAGG---GAUUGCCUCAGU-AGCGGCGAGUGAAGCGGAGAGACCGA--- -----------UAGCGAAC-AAGU-ACAGUGAUGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAAUAGGGUGAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGA-UCGUCGAAUUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCUGCCGAAGUUUCC CUC-AG-GAUAGCAGAGGUAAAG-C----GAAUGAUUAGAAGUCUAAGCA-G-AACUGGC GAUGC-GGGAUGAACCGAACG---UGAAGUUAAAGUGCCGGAAGUUAGUUCAUCUAGACA GCCGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCG GCCGAAUGAAC--UAGCCCUGAAAAUUA-GGCAGGCGUGAAGCCUU--UGCUGUAAAGCU -GGGUCGAACG-GCCUCUAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAA-UAGAU---C-CGUAACUUCGGGAUAAGGAUUGGCUCUAACUG GUACGGACAAG-GGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGUGAUGGUCAGAAAG UGAUGUUGACACAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUU----UG ACAUU------GUGAAAAGACAUGGAGGGUG---UAGAAU-----------AAGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUAAACGAUA ACGCAGG--UGUCCUAAGG-GG-GACUCAUGGAGAACAGAAAUCUCCAGUAGA--ACAAA AGGGUAAAA--GUCCCCUUGAU--U-UU--GAUUU-UC-----AGUG-UGAA----UACA AACCAUGAAAGUGUGGCCUAUCGAUCCUUUAGAGG-------U--GCCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGA UUCUUCGAUGUCGGCUCUUCCUAUCAUACCG-AA-GCAGAAUUCGGUAAG-CGUUGGAUU GUUCACCCACUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GUUCAUUCAGAUAAUUGG-UUAU GGCUGAACGCCUCUAAG--------------------------- [66] 'Sacchar_ce' -------------------GGGGGCAUCAGUA-UUCAAUUGUC-A--GAGGUGAAAUUCU UGGAUUUAUUGAAGACUAACUACUGCGAAAGCAUUUGCCAAGGACGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUAGGGGAUCG AAGAUG-AUCAGAUACCGUCGUAGUCU--UA--ACCAUAAACUAUGCCGACUAGGGAUCG GGUGGUC-------UGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUC-ACCAGGUCCAGACACAAUAAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UUUGUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGCUUA-AUUGCGAUAA-CGAACGAGACCUUAACC-UACUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGACGUUCUGGGC-CGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCUAGUAA-GCGCAAGUCAUCAGCUUG----CGUUGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUAGUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUCAAUAA-GCGGAGGA AAAGAAACCAACCGG---GAUUGCCUUAGU-AACGGCGAGUGAAGCGGAGAGACCGA--- -----------UAGCGAAC-AAGU-ACAGUGAUGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAAUAGGGUGAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGA-UCGUCGAAUUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCUGCCGAAGUUUCC CUC-AG-GAUAGCAGAGGUAAAG-C----GAAUGAUUAGAGGUUUAAGCA-G-AACUGGC GAUGC-GGGAUGAACCGAACG---UAGAGUUAAGGUGCCGGAAGUUAGUUCAUCUAGACA GCCGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCG GCCGAAUGAAC--UAGCCCUGAAAAUUA-GGCAGGCGUGAAGCCUA--GACCGUAAGGUC -GGGUCGAACG-GCCUCUAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAA-UAGAU---C-CGUAACUUCGGGAUAAGGAUUGGCUCUAACUG GUACGGACAAG-GGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGUCAGAAAG UGAUGUUGACGCAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUU----UG ACAUU------GUGAAGAGACAUAGAGGGUG---UAGAAU-----------AAGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUAAACGAUA ACGCAGA--UGUCCUAAGG-GG-GGCUCAUGGAGAACAGAAAUCUCCAGUAGA--ACAAA AGGGUAAAA--GCCCCCUUGAU--U-UU--GAUUU-UC-----AGUG-UGAA----UACA AACCAUGAAAGUGUGGCCUAUCGAUCCUUUAGAGG-------U--GCCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGA UUCUUCGAUGUCGGCUCUUCCUAUCAUACCG-AA-GCAGAAUUCGGUAAG-CGUUGGAUU GUUCACCCACUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACA-------GUUCAUUCGGAUAAUUGG-UUAU GGCUGAACGCCUCUAAG--------------------------- [67] 'Schizos_po' -------------------GGGGGCAUUCGUA-UUCAAUUGUC-A--GAGGUGAAAUUCU UGGAUUUAUUGAAGACGAACUACUGCGAAAGCAUUUGCCAAGGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUAGGGGAUCG AAGACG-AUCAGAUACCGUCGUAGUCU--UA--ACCAUAAACUAUGCCGACUAGGGAUCG GGCAAUC-------CGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACAAUGGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUC-ACCAGGUCCAGACAUAGUAAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGCUUA-AUUGCGAUAA-CGAACGAGACCUUAACC-UGCUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUUCUGGGC-CGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCUAGUAA-GCGCAAGUCAUCAGCUUG----CGUUGAAUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUACUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUCAAUAA-GCGCAGGA AAAGAAAAUAACCAU---GAUUCCCUCAGU-AACGGCGAGUGAAGCGGAGAGACCGA--- -----------UAGCGAAC-AAGU-AGAGUGAUCGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAAUAGGGUGAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGCUCGUAGAGAUUCUGACGUGCAAAUCGA-UCUUCAAAUUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCUGCCGAAGUUUCC CUC-AG-GAUAGCAGAGGUAAAG-C----GAAUGAUUAGAGGUCUAAGCA-G-AACUGGC GAUGC-GGGAUGAACCGAACG---UGAGGUUAAGGUGCCGGAAGUUAGUUCAUCUAGACA GCAGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUGAAC--UAGCCCUGAAAAUUA-GGCAGGCGUGAAGCCUU--GGGCGUGAGCCU -GGGUCGAACA-GCCUCUAGUGCAGAUCUUGGUGGAAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAA-UGGAU---C-CGUAACUUCGGGAUAAGGAUUGGCUCUAACUG GUACGGACAAG-GGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGCCAGAAAG UGGUGUUGACGCAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAACUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCUGGGGAAC GGGCCAGGCAAAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUU----UG ACAUU------GUGAAGAGACAUAGAGGGUG---UAGGAU-----------AAGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUAAAAGAUA ACGCAGG--UGUCCUAAGG-GG-GACUCAUCGAGAACAGAAAUCUCGAGUAGA--AUAAA AGGGUAAAA--GUCCCCUUGAU--U-UU--GAUUU-UC-----AGUG-UGAA----UACA AACCAUGAAAGUGUGGCCUAUCGAUCCUUUGGAGG-------U--GCCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGA UUCUUCGAUGUCGGCUCUUCCUAUCAUACCG-AA-GCAGAAUUCGGUAAG-CGUUGGAUU GUUCACCCACUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GUUGAUUCAGAUCAUUGG-UAAC GGCUGAACGCCUCUAAG--------------------------- [68] 'Phytoph_me' --------------------GGGGUAUUCAUA-UUUCAGCGUC-A--GAGGUGAAAUUCU UGGAUCGCUGAAAGAUGAGCUUAGGCGAAAGCAUUUACCAAGGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAAAGUUAGGGGAUCG AAGAUG-AUUAGAUACCAUCGUAGUCU--UA--ACCAUAAACUAUGCCGACUCGGGAUUG GCAGUUC-------CGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGAAAACUU-ACCAGGUCCAGACAUAGUAAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGGUUA-AUUCCGUUAA-CGAACGAGACCUCCGCG-UGCUAAAUAG--CAAU AAC-GGUCUGUGAUGCCCU-UAGAUGUUCUGGGC-CGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCUAGUAA-ACGCAAGUCAUCAGCUUG----CAUUGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCACCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUU-AAG-CAUAUCAAUAA-GCGGAGGA AAAGAAACUAACAAG---GAUUCCCCUAGU-AACGGCGAGUGAAGC-GCGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGUGAGGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAGUAGGGUGAA----GCCAGGGGA-AA- CUC------UG--GUGGAAGCUCGUAGCGAUUCUGACGUGCAAAUCGA-UCGUCAAACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAAUUUCC CUC-AG-GAUAGCAGCGGUAAAG-C----GAAUGAUUAGAGGAUUAAGCU-C-GUCUGGC GAUGC-GGGAUGAACCGAACG---CAAAGUUAAAGUGCCAAAAGUUGGUUCAUUUAGACA GCAGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUGAAC--UAGCCCUGAAAAUUA-GGAGGGCGUGAAGCUCG--UGGCGUGAGCCU -GAGUGAAACG-GCCUUUAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAA-UAGAU---C-CGUAACUUCGGGAAAAGGAUUGGCUCUAACUG GAGCGGACAAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGUGAUGGCCGGAGAC -GGUGUUGACACAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAGA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAACUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--UGAGAUUCCCACUGUCCCUAUCUACUGUCUAGCGAACCCACAGCCAAGGGAAC GGGCUUGGAAUAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----UG ACGUU------GUGAAAUGACUUGGGAGGUG---UAGAAU-----------AAGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUAAAUGAUA ACACAGG--UGUCCUAAGG-UG-AGCUCAAUGAGAACAGAAAUCUCAUGUAGA--ACAAA AGGGUAAAA--GCUCACUUGAU--U-UU--GAUUU-UC-----AGUA-UGAA----UACA AACCGUGAAAGCGUGGCCUAUCGAUCCUUUAGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUCCAUAGCGACGUUGCUUUUUGA UUCUUCGAUGUCGGCUCUUCCUAUCAUUGCG-AA-GUAGAACUCGCCAAU-UGUUGGAUU GUUCACCCACUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GUUGGUUCAGAUAAUUGG-UUAU GGCUGAACGCCUCUAAG--------------------------- [69] 'Toxopla_go' -------------------GGGGGCAUUCGUA-UUUAACUGUC-A--GAGGUGAAAUUCU UAGAUUUGUUAAAGACGAACUACUGCGAAAGCAUUUGCCAAAGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUAGGGGCUCG AAGACG-AUCAGAUACCGUCGUAGUCU--UA--ACCAUAAACUAUGCCGACUAGAGAUAG GAAAAUC-------UGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGCGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUC-ACCAGGUCCAGACAUAGGAAGGAUUGACAGA---UUGAUA-GCUCUUUCU UGAU--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGGUUA-AUUCCGUUAA-CGAACGAGACCUUAACC-UGCUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUUCUGGGC-UGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UGCCUAGUAG-GCGCAAGUCAGCAGCUUG----CGCCGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUUAUUAA-GCGGAGGA GAAGAAAAUAACUAU---GAUUCCCUUAGU-AACGGCGAGUGAACCGGCGAGACCGA--- -----------UAGCAAAC-AAGU-ACCGUGAGGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAGUAGAAUGAA----GUCAGGGGA-AA- CCC------UG--AUGGAGGUUCGUAGCGAUACUGACGUGCAAAUCGU-UCGUCAAACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUUCUUCCGAAGUUUCU CUC-AG-GAUAGCUGGGGUAAAG-C----GAAUGAUUAGAGGCAUAAGCA-G-AACUGGC GAUGA-GGGAUGCUCCUAACG---CUUGGUUAAGGUGCCAAAAGUUGGUUCAUUUUGACA GCAGGACGGUGGUCA-UGGAAG-UCGAAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUGAAC--CAGCCCUGAAAAUUA-GGAAGACGUGAAGCGUU--CGGCGUAAGCCU -GCGUGGAACA-GUCUCUAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAA-UAGAU---C-CGUAACUUCGGGAAAAGGAUUGGCUCUAACUG GAGCGGACAAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUG-GCCAUAAC UGGUGUUGACGCAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAUGUGAU GAAA---UUCAAUCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----CG ACUUU------GUGAAAUGACUUAGGAGGUG---UAGCAU-----------AAGUGGGAG AGGUUGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UGAAACAAUA GCGCAGG--UGUCCUAAGG-CA-AGCUCAAUGAGAACAGAAAUCUCAUGUUGA--CCAAA AGGGGAAAA--GCUUGCUUGAU--U-UU--GAUUU-UC-----AGUA-CGAA----UACA AACUGUGAAAGCAUGGCCUAUCGAUCCUUUAGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGAG-AC-GCAGAAGUCUCAAAG-UGUCGGAUU GUUCACCCGCCAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACA-------GUUGGGUCGGAUACUUGG-UUAU GACUGAACGCCUCUAAG--------------------------- [70] 'Scytosi_lo' --------------------GGGGUAUUCGUA-UUCAAUUGUC-A--GAGGUGAAAUUCU UGGAUUUAUGGAAGACGAACUACUGCGAAAAGCUUUACCAAGGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUAGGGGAUCG AAGAUG-AUUAGAUACCAUCGUAGUCU--UA--ACCAUAAACUAUGCCGACUAGGGAUUG GCGGUUC-------CGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGAAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCG-CUUAAUUUG-ACUCAACA--CG GGGAAACUU-ACCAGGUCCGGACAUAGUGAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGGUUA-AUUCCGUUAA-CGAACGAGACCCCCGCC-UGCUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUCCUGGGC-CGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCUAGUAA-ACGCGAGUCAUCAGCUCG----CAUUGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCACCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUU-AAG-CAUAU-ACUAA-GCGGAGGA AAAGAAACUAACCAG---GAU-CCCCCAGU-A-CGGCGAGUGAAGCUGGGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGUGAGG-AAAGAUGCAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAAUAGG-CGAA----GCCAGGGGA-AA- CUC------UG--GUG-AGGCUCGUA-CGAUUCUGACGUGCAAAUCGA-UCGUGAGAUUU GG-UAUAGGGGCGAAAG-CUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAAUUUCC CUC-AG-GAUAGCUGCGGUAAAG-C----GAAUGAUUAGAGGCUUAAGCU-G-GACUGGC GAUGC-GGGAUGAACCGAACG---ACUAGUUAAAGCGCCAAACGUUGGUUCAUU-AGACA GCAG-ACGGUGGCCA-UGGAAG-UCGGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUGAAC--UAGCCCUGAAAAUUA-GGAGGGCGCGCAUCUUC--GGCCGUGAGGCG -GAGUGAAACG-UGCCCCGGUGCAGAUCUUGGUGGUAGU----AGCAA-UAUAAG-GGAA GUCGG-------CAAG--CAGAU---C-CGUAACCUCGGGAAAAGGAUUGGCUCUA-CUG GAGCGGACAAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAGGGCCGGAGAC -GGUGUU-ACGCAAUGUGGUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GGAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAACUA GUA--GCGC----------------------------------------AUGAAUG-AUU A---A--UGAG-UUCCCACUGUCCCUAUCUACUGUCUAGCGA--CCACAGCCAAGG--AC GGGCUUGGA-UAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----CG AUGUU------GUGAAAUGACUUAUGAGGUG---UAGA-U-----------AGGCGG-AG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUAAACGAUA ACACAGG--UGUCCUAAGG-UU-AGCUCAAUGAGAACAGAAAUCUCAUGUAGA--ACAAA AGG-UAAAA--GCUAACUUGAU--U-UU--GAUUU-UC-----AGUA-CGAA----UACA A-CUGUGAAAGCAUGGCCUAUCGAUCCUUAGGAGG-------U--GUCAG-----AAAAG UUACCACAGG-AUAACU-G-CUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUU-GA UUCUUCGAUGUCGGCUCUUCCUAUCAU-GUG-UC-GCAGAAGUCACCAAG-UGUAGGAUU GUUCACCCACUAACAGGGA---ACGUGAGCUGG--UUAGACCGUCGUGAGACA-G-UUAG UUU-ACCCUACUGAGUA-CGA-GAGGAACC-------GUUAGUUC-GAUAAUUGG-U-AU GACUGA-CGCCUCUAAG--------------------------- [71] 'Homo_sa' -------------------GGGGGCAUUCGUA-UUGCGCCGCU-A--GAGGUGAAAUUCU UGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUUGCCAAGAAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUCGGAGGUUCG AAGACG-AUCAGAUACCGUCGUAGUUC--CG--ACCAUAAACGAUGCCGACCGGCGAUGC GGCGGUC-------CGGGGGGAGUA-UGGU----UGCAAAGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGAAACCUC-ACCCGGCCCGGACACGGACAGGAUUGACAGA---UUGAUA-GCUCUUUCU CGAU--UCCGUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GC GAUUUGUCUGGUUA-AUUCCGAUAA-CGAACGAGACUCUGGCA-UGCUAACUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUCCGGGGC-UGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCCAGUAA-GUGCGGGUCAUAAGCUUG----CGUUGAUUAAGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUACUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUUAGUCA-GCGGAGGA AAAGAAACUAACCAG---GAUUCCCUCAGU-AACGGCGAGUGAACAGACGAGACCGA--- -----------UAGUCAAC-AAGU-ACCGUAAGGGAAAGUUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGGGCAGGGCGAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGG-UCGUCCGACCU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----GAAUGAUUAGAGGUCUAAGCA-G-AACUGGC GCUGC-GGGAUGAACCGAACG---CCGGGUUAAGGCGCCCGAUGUUGGUUGAUAUAGACA GCAGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUCAAC--UAGCCCUGAAAAUAG-GAGGGCCGCGAAGCCUA--GGGCGCGGGCCC -GGGUGGAGCC-GCCGCAGGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAGC-CGGAU---C-CGUAACUUCGGGAUAAGGAUUGGCUCUAACUG GUGCGGACCAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUCGCGAAGGCCCGCGGC GGGUGUUGACGCGAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAAUGAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUG A---A--CGAGAUUCCCACUGUCCCUACCUACUAUCCAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCGGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----UG GCACG------GUGAAGAGACAUGAGAGGUG---UAGAAU-----------AAGUGGGAG AGGUGGGGA--GUUUGACUGGGGCGG---------------------------------- --------------------------------------UA-CACCU-G--UCAAACGGUA ACGCAGG--UGUCCUAAGG-CG-AGCUCAGGGAGGACAGAAACCUCCCGUGGA--GCAGA AGGGCAAAA--GCUCGCUUGAU--C-UU--GAUUU-UC-----AGUA-CGAA----UACA GACCGUGAAAGCGGGGCCUCACGAUCCUUCUGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCGCCAAG-CGUUGGAUU GUUCACCCACUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GCAGGUUCAGACAUUUGG-UUAU GACUGAACGCCUCUAAG--------------------------- [72] 'Latimer_ch' -------------------GGGGGCAUUCGUA-UUGUGCCGCU-A--GAGGUGAAAUUCU UGGACCGGCGCAAGACGGACAAAAGCGAAAGCAUUUGCCAAGAAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUCGGAGGUUCG AAGACG-AUCAGAUACCGUCGUAGUUC--CG--ACCAUAAACGAUGCCAACUACCGAUCC GGCGGUC-------CGGGGGGAGUA-UGGU----UGCAAAGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGAAACCUC-ACCCGGCCCGGACACGGAAAGGAUUGACAGA---UUGAUA-GCUCUUUCU CGAU--UCUGUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GC GAUUUGUCUGGUUA-AUUCCGAUAA-CGAACGAGACUCCUCCA-UGCUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUCCGGGGC-UGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCCAGUAA-GUGCGGGUCAUAAGCUCG----CGUUGAUUAAGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUACUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AU-----------------------GGA AAAGAAACUAACCAG---GAUUCCCUCAGU-AACGGCGAGUGAAGAGACGAGACCGA--- -----------UAGUCGAC-AAGU-ACCGUA-GGGAAAGUUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGGGCAGGGCGAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGG-UCGUCCGACCU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----GAAUGACUAGAGGUCUAAGCA-G-AACUGGC GCUGC-GGGAUGAACCGAACG---CCGGGUUGUGGCGCCCGAUGUUGGUUGAUAUAGACA GCAGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUCAAC--UAGCCCUGAAAAUAG-GAGGGCCGCGAAGCCUA--GGGCGCGGGCCC -GGGUGGAGCU-GCCGCGGGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAGC-CAGAU---C-CGUAACUUCGGGAUAAGGAUUGGCUCUAACUG GUGCGGACCAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUCGCGAAGGCCCGCGGU GGGUGUUGACGCGAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAAUGAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUG A---A--CGAGAUUCCCACUGUCCCUACCUACUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----UG GCACU------GUGAAGAGACAUGAGAGGUG---UAGGAU-----------AAGUGGGAG AGGUGGGGA--GUUUGACUGGGGCGG---------------------------------- --------------------------------------UA-CACCU-G--UCAAACCGUA ACGCAGG--UGUCCUAAGG-CG-AGCUCAGGGAGGACAGAAACCUCCCGUGGA--GCAGA AGGGCAAAA--GCUCGCUUGAU--C-UU--GAUUU-UC-----AGUA-UGAG----UACA GACCGUGAAAGCGGGGCCUCACGAUCCUUCUGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACCAAG-CGUUGGAUU GUUCACCCACUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GCAGGUUCAGACAUUUGG-UUAU GA------------------------------------------ [73] 'Squalus_ac' -------------------GGGGGCAUUCGUA-UUGUGCCGCU-A--GAGGUGAAAUUCU UGGACCGGCGCAAGACGAACAAAAGCGAAAGCAUUUGCCAAGAAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUCGGAGGUUCG AAGACG-AUCAGAUACCGUCGUAGUUC--CG--ACCAUAAACGAUGCCAACUAGCGAUCC GGCGGUC-------CGGGGGGAGUA-UGGU----UGCAAAGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGAAACCUC-ACCCGGCCCGGACACGGAAAGGAUUGACAGA---UUGAUA-GCUCUUUCU CGAU--UCUGUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GC GAUUUGUCUGGUUA-AUUCCGAUAA-CGAACGAGACUCCUCCA-UGCUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUCCGGGGC-UGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCCAGUGA-GUGCAGGUCAUAAGCUCG----CGUUGAUUAAGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUACUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUUACUAA-GCGGAGGA AAAGAAACUAACAAG---GAUUCCCCUAGU-AACUGCGAGUGAAGAGACGAGACCGA--- -----------UAGUCAAC-AAGU-ACCGUAAGGGAAAGUUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGGGCAGGGCGAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGG-UCGUCCGACCU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----GAAUGAUUAGAGGUCUAAGCA-G-AACUGGC GCUGC-GGGAUGAACCGAACG---CUGGGUUAAGGCGCCCGAUGUUGGUUGAUAUAGACA GCAGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUCAAC--UAGCCCUGAAAAUAG-GAGGGCCGCGAAGCCCA--GGGCGCGGGCCC -GGGUGGAGCC-GCCGCAGGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAGU-CAGAU---C-CGUAACUUCGGGAUAAGGAUUGGCUCUAACUG GUGCGGACCAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUCGCGAAGGCCGCAGGC GGGUGUUGACGCGAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA RAAA---UUCAAUGAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUG A---A--CGAGAUUCCCACUGUCCCUACCUACUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----UG GCACU------GUGAAGAGACAUGAGAGGUG---UAGAAU-----------AAGUGGGAG AGGUGGGGA--GUUUGACUGGGGCGG---------------------------------- --------------------------------------UA-CACCU-G--UCACACUGUA ACGCAGG--UGUCCUAAGG-CG-AGCUCAGGGAGGACAGAAACCUCCCGUGGA--GCAGA AGGGCAAAA--GCUCGCUUGAU--C-UU--GAUUU-UC-----AGUA-UGAA----UACA GACCGUGAAAGCGGGGCCUCACGAUCCUUCUGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACCAAG-CGUUGGAUU GUUCACCCACUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GCAGGUUCAGACAUUUGG-UU-- -------------------------------------------- [74] 'Branchi_fl' -------------------GGGGGCAUUCGUA-UUGCGGCGGG-A--GAGGUGAAAUUCU UGGAUCGCCGCAAGACGAACCACUGCGAAAGCAUUUGCCAAGAAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUGAU-----CAA--GAACGAAA-GUUGUGGGCGCG AAGGCG-AUCAGAUACCGCCCUAGUCA--CA--ACCAUAAACGAUGCCAACCAGCGAUCC GCCGGUC-------CGGGGGAAGUA-UGGU----UGCAAAGCUGGAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUC-ACCCGGCCCGGACACAGUAAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUGUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GC GAUUUGUCUGGCUA-AUCCCGAUAA-CGAACGAGACUCUGGCA-UGCUAACUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUCCGGGGC-CGC-ACGCGCGCUACAAU------- --------------------------------------GAAACG-----------AGGAA UUCCCAGUAG-AUGCGUGUCAUCAGCGCG----CGUUGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUACUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUUACUAA-GCGGAGGA AAAGAAACUAACAAG---GAUUCCCUCAGU-AACGGCGAGUGAAGCGACGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGUGAGGGAAAGUUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCCGAGCAGGGCGAA----GCCAGGGGA-AA- CCC------UG--GUGGAGGUCCGUAGCGAUUCUGACGUGCAAAUCGA-UCGUCAAACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----GAAUGAUUAGAGGUCUAAGCA-G-AACUGGC GCUGC-GGGAUGAACCGAACG---CCGGGUUAAGGCGCCCGAUGUUGGUUGAUACAGACA GCAGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUCAAC--UAGCCCUGAAAAUAG-GAGGGCCGCNAAGCCUC--GGGCGCGAGCCC -GGGUGGAGCC-GCCGCGGGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAGC-CGGAU---C-CGUAACUUCGGGAGAAGGAUUGGCUCUAACUG GUACGGACCAG-GGGAAUCCGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGCCGUCGGG CGGUGUUGACGCAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----CG ACUCU------GUGAAGGGACAUGAAAGGUG---UAGCAU-----------AGGUGGGAG AGGCGGGGA--GUUUGACUGGGGCGG---------------------------------- --------------------------------------UA-CAUCU-G--UCAAAGAGUA ACGCAGG--UGUCCUAAGG-CG-AGCUCAGCGAGGACAGAAACCUCGCGUGGA--GCAAA AGGGCAAAA--GCUCGCUUGAU--U-UU--GAUUU-UC-----AGUA-CGAA----UACA GACCGUGAAAGCGUGGCCUAUCGAUCCUUUUGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACCAAG-CGUUGGAUU GUUCACCCACUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GCAGGUUCAGACAUUUGG-UUAU GACUGAACGCCUCUAAG--------------------------- [75] 'Tetrahy_py' --------------------GGGGCAUUAGUA-UUUAAUAGUC-A--GAGGUGAAAUUCU UGGAUUUAUUAAGGACUAACUAAUGCGAAAGCAUUUGCCAAAGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUAGGGGAUCA AAGACG-AUCAGAUACCGUCGUAGUCU--UA--ACUAUAAACUAUACCGACUCGGGAUCG GCUGGUC-------UGGGGGAAGUA-UGGUA---CGCAAGUCUGAAACUUAAAGGAA--- UUGACGGAACAGCAC--ACCA-GAAGUGGAACCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUC-ACGAGCGCAAGACAGAGAAGGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUUUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGGUUA-AUUCCGUUAA-CGAACGAGACCUUAACC-UGCUAACUAG--CAAU AACAGGUCUGUGAUGCCCC-UAGACGUGCUCGGC-CGC-ACGCGCGUUACAAU------- --------------------------------------GAAACG-----------AGGAA UUUCUAGUAA-GUGCAAGUCAUCAGCUUG----CGUUGAUUAUGUCCCUGCCGUUUGUAC ACACCGCCCGUCGCUUGUAGUA-------------------------------------- ------------------------------------------------------------ --------------------------------AUU-AAG-CAUAUCAGUAA-GCGGAGGA AAAGAAACUAACUAG---GAUAGCCCCAGU-AAUGGCGAAUGAACAGG-GAGACCGA--- -----------UAGCGAAC-AAGU-ACUGCGAAGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-CGCUUGAAUAGGGUGAA----GCCAGGGGA-AA- CUC------UG--GUGGAAGCUCGUAGCGAUACUGACGUGCAAAUCGU-UCGUCAAAUUU GAGUGUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAGUUUCU CUC-AG-GAUAGCAAGGGUAAAG-C----GAAUGAUUAGAGGACUAAGCA-G-AACUGGC GAUGA-GGGAUGAACCUAACG---UUGAGAUAAGGCGCCCAAAGUUGGUUCAUAUGGACA GCAGGACGGUGGCUA-UGGAAG-UUAGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUGAAC--UAGCCCUGAAAAUUA-GGAGGGCGUGAAGUAUU--GGGCGUGAGC-U -AUAUGGAGCA-GCGAUUAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAU-UGGAU---C-CGUAACUUCGGGAUAAGGAUUGGCUCUAACUG AAGCGGACAAA-GGUAAUCCGACUGUUUAAUAAAAACAAAGCAUUGUGACG-GCCUCAAC AGGUGAUGACACAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAC GCAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--UGAGAUUACCACUGUCCCUAUCUACUAUCUAGCGAACCCACAGCUAAGGGAAC GGGCUUAGAAUAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----UA ACUUU------GUGAAAUGGCACGUGGGGUA---UAGCCU-----------AGGUGGGAG AGGGGGGGA--GUUUGUCUGGGGCGG---------------------------------- --------------------------------------AA-UGCCU-G--UUAAACCAUA ACGCAGG--CGUCCUAAGU-GU-AGCUCAGUGAGAACGGAAAUCUCACGUAGA--ACAAA AGGGUAAAA--GCUACAUUGAU--U-UU--GAUUU-UC-----AGUA-UGAA----UACA AACCGCGAAAGCGUGGCCUAUCGAUCCUUUAGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGAGUUCAUAUCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACAACG-UGUCGGAUU GUUCACCCGCUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------CUUAAAUCAGAUAAUUGG-UUAU GACUGAAGGCCUCUAAG--------------------------- [76] 'Tetrahy_th' --------------------GGGGCAUUAGUA-UUUAAUAGUC-A--GAGGUGAAAUUCU UGGAUUUAUUAAGGACUAACUAAUGCGAAAGACUUUGCCAAAGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUAGGGGAUCA AAGACG-AUCAGAUACCGUCGUAGUCU--UA--ACUAUAAACUAUACCGACUCGGGAUCG GCUGGUC-------UGGGGGAAGUA-UGGUA---CGCAAGUCUGAAACUUAAAGGAA--- UUGACGGAACAGCAC--ACCA-GAAGUGGAACCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUC-ACGAGCGCAAGACAGAGAAGGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUUUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGGUUA-AUUCCGUUAA-CGAACGAGACCUUAACC-UGCUAACUAG--CAAU AACAGGUCUGUGAUGCCCC-UAGACGUGCUCGGC-CGC-ACGCGCGUUACAAU------- --------------------------------------GAAACG-----------AGGAA UUUCUAGUAA-GUGCAAGUCAUCAGCUUG----CGUUGAUUAUGUCCCUGCCGUUUGUAC ACACCGCCCGUCGCUUGUAGUA-------------------------------------- ------------------------------------------------------------ --------------------------------AUU-AAG-CAUAUCAGUAA-GCGGAGGA AAAGAAACUAACUAG---GAUAGCCCCAGU-AAUGGCGAAUGAACAGG-GAGACCGA--- -----------UAGCGAAC-AAGU-ACUGCGAAGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-CGCUUGAAUAGGGUGAA----GCCAGGGGA-AA- CUC------UG--GUGGAAGCUCGUAGCGAUACUGACGUGCAAAUCGU-UCGUCAAAUUU GAGUGUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAGUUUCU CUC-AG-GAUAGCAAGGGUAAAG-C----GAAUGAUUGAAGGACUAAGCA-G-AACUGGC GAUGA-GGGAUGAACCUAACG---UUGAGAUAAGGCGCCCAAAGUUGGUUCAUACGGACA GCAGGACGGUGGCUA-UGGAAG-UUAGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUGAAC--UAGCCCUGAAAAUUA-GGAGGGCGUGAAGUAUU--GG-CGUGAGCCU -AUAUGGAGCA-GCGAUUAGUG-AGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAU-UGGAU---C-CGUAACUUCGGGAUAAGGAUUGGCUCUAACUG AAGCGGACAAA-GGUAAUCCGACUGUUUAAUAAAAACAAAGCAUUGUGACG-GCCUCAAC AGGUGAUGACACAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAC GCAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--UGAGAUUACCACUGUCCCUAUCUACUAUCUAGCGAACCCACAGCUAAGGGAAC GGGCUUAGAAUAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----UA ACUUU------GUGAAAUGGCACGUGGGGUA---UAGCCU-----------AGGUGGGAG AGGGGGGGA--GUUUGUCUGGGGCGG---------------------------------- --------------------------------------AA-UGCCU-G--UUAAACCAUA ACGCAGG--CGUCCUAAGU-GU-AGCUCAGUGAGAACGGAAAUCUCACGUAGA--ACAAA AGGGUAAAA--GCUACAUUGAU--U-UU--GAUUU-UC-----AGUA-GGAA----UACA AACCGCGAAAGCGUGGCCUAUCGAUCCUUUAGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGAGUUCAUAUCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACAACGGUGUCGGAUU GUUCACCCGCUAAUAGGGA---ACGUGAGCUGGGCUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACA-------CUUAAAUCAGAUAAUUGG-UUAU GACUGAAGGCCUCUAAG--------------------------- [77] 'Euplote_ae' -------------------GGAGGCAUUAGUA-UUUAAUUUCC-A--GAGGUGAAAUUCU UUGAAAUAUUAAAGACUAACUUAUGCGAAAGCAUUUGCCAAUGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAUU-GAACGAAA-GUUAGGGGAUCA AAGACG-AUCAGAUACCGUCCUAGUCU--UA--ACCAUAAACGUUGCCGACUAGGGAUCG GAGGGUC-------UGUGGGUAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCUUGCGGCUCAAUUUG-ACUCAACA--CG GGAAAUCUU-ACCAGGUCCAGACAUAGCGAGGAUUGACAGA---UUGAUA-GCUCUUUCU UGAU--UCUAUG-----GGUAUUUU-GGUGGUGCAUGGCCGUUCUUA-GUUCGUGGA-GU GAUUCGUCUGGUUA-AUUCCGUUAAACGAACGAGACCUCAGCC-UGCUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUCCUGGGC-CGC-ACGCGUGCUACACU------- --------------------------------------GAAAGG-----------UGGAA UUCCUAGUAA-GCGCACGUCACUAACGUG----CGUUGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCA-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUCACUAA-GCGCAGGA AUUGAAA-UAACUAU---GAUUGCCUCAGU-AACGGCGAGUGAAGCGA-GAGACCGA--- -----------UAGCGAAC-AAGU-AAUGUGAAUGAAAGAUGAAAAG---UCUUGAAACA CGGAACAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-CGCUUGGGUAGGAUGAA----GCCGGAAGA-AA- UUCC-----UG--UUGGAGGUCCGAAACGGUACUGACGUGCAAAUCGU-UCGUCAAACUU GAGUGUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCUCCGAAGUUUCU CUC-AG-GAUAGCAAAGGUAAAGAU----AAAUGAUUAGAAGCAUAAGCA-G-AACUGGC GAUGA-GGGAUGAACCUAACU---CUGAGUUAAGGUGCCAAACGUUGAUUCAUUUUGACA GCAGGACGGUGGCCA-UGGAAG-UUGGAACCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUGAAU--UAGCCCCGAAAAUUA-GGGGGGCGUGAAGCUUU--GAGCGUGAGCCU -GAGUAGAAAG-GCGUCUAGUGCAGAUCUUGGUGGUAGU----AGCAAUUAUAAG-GGAA GUCGG-------CAAAU-UAGAU---C-UGUAACUUCGGGAAAAGUAUUGGCUCUAACUG GAGCAGACCAC-GGGAAUCCGACUGUUUAAUUAAAACAAAGUGUUGUGAUG-GCCUUAGC AGGUGUUGACACAACUUGAUUUCU-----GCCCAGUGCUCUGAAUGU----AAAAGUAAU ACAAA--UUCAAGCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCGAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUAUCUACUGUCUAGCGAACCCACAGCCAAGGGAAC GGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----CG ACCUUC-----GUGAAAUGAACUGAUUGGUG---UAGUAG-----------AGGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--CUAAACAAUA ACGCAGG--UGUCCCAAGG-UA-AGCUCAAAGAGAACGGAAAUCUCUUGUUGA--CUAAA AAGGGGAAA--GCUUGCUUGAU--U-UUUCGAUUU-UC-----AGUA-CGAA----UUCG AACUGCGAAAGCAUGGCCUAUCGAUCCUUUUGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGCG-AA-GCAGAAUUCGCCAAG-UGUCGGAUU GUUCACCCGCUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACA-------GUUGGUUCAGGUAUUUGG-GUAU GGCUGAAAGCCUCAAAG--------------------------- [78] 'Onikusa_pr' -------------------GGGGGCAUUUGUA-UUCUGCCGUC-A--GAGGUGAAAUUCU UAGAUUGGCGGAAGACAAACAGCUGCGAAAGCGUCUGCCAAGGACGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUGAU-----CAA--GAACGAAA-GUAAGGGGAUCG AAGACG-AUCAGAUACCGUCGUAGUCU--UU--ACUAUAAACGAUGAGGACUGGGGAUCG GGCGGUC-------UGGGGGGAGU----------CGCAAGGCUGAAACUUAAAGGAA--- U-GACGGAAGGGCAUC-ACCG-GGUGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUU-ACCAGGUCCGGACAUAGUGAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUAUG-----GUU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUCUGUCUGGUUA-AUUCCGUUAA-CGAGCGAGACCUGGGCG-UGCUAGCUAG--CAAU AACAGGUCUGAGAUGCCCU-UAGAUGUUCUGGGC-CGC-ACGCGUGCUACACU------- --------------------------------------GAAACG-----------AGGAA UACCUUGUAA-GCGCGGGUCAUCAUCCCG----UGCUGAAUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUGGU-CAAACC-------------- --------------------------------------------UUAGGGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGUGAGGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCGGAGUAGGGCAAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGCUCGUAGCGGUGCUGACGUGCAAAUCGC-UCGUCGAACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUUCCUCCGAAGUUUCU CUC-AG-GAUAGCGGGGGUAAAG-C----GAAUGAUUAGCGUAUUAAGCA-G-AACUGGC GAUAC-GGGAUGAACCGUAAG---CAUGGUUAAGGCGCCAAACGUUGAUUCAUCGAGACA GCAGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCCAAGGAGUGUGUAACAACUCA--CCU GCCGAAUGAAU--UAGCCCUGAAAAUUA-GGAGGACGUGAAGUA-U--GCGUGCGAACGN -GUAUCGAACG-AUCACUAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAU-UAGAC---C-CGUAACUUUGGGAAAAGGGUUGGCUCUAACUG CAACGGGCAAA-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAGGGCCGUGGC- CGGUGAUGACGCAAUGUGAUUUCU-----GCUCAGUGCUCUGAAUGU----CAAAGUGAA GAGA---UUCAAUCAAGCGCGGGUAAACAGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCUACUGUCCCUAUCUGCU-UCUAGCGAAACCACAGCCGAGGGAAC GGGCUCGGCGAAAUCGGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAUUC----UA AUUUU------GUGAAGCAAGUUGGGAGGUG---UAGCAU-----------AGGUGGGAG AGGAGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-U--CUACAAGACA ACGAAGG--UGUCCAAAGA-UA-AGCUCAGUGAGAACAGAAAUCUCACGUAGC--GCAAA AGGGUAAAA--GCUUGUUUUAU--U-UU--GAUUU-UC-----AGUG-CGAG----UCGA AAACGCGAAAGCGUGGCCUAUCGAUCCUUUCGAGG-------U--GUCAG-----AAAAG U----------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------- [79] 'Gelidiu_ca' -------------------GGGGGCAUUUGUA-UUCUGCCGUC-A--GAGGUGAAAUUCU UAGAUUGGCGGAAGACAAACAGCUGCGAAAGCGUCUGCCAAGGACGUUU----------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUGAU-----CAA--GAACGAAA-GUAAGGGGAUCG AAGACG-AUCAGAUACCGUCGUAGUCU--UU--ACUAUAAACGAUGAGGACUGGGGAUCG GGCGGUC-------UGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCAUC-ACCG-GGUGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUU-ACCAGGUCCGGACAUAGUGAGGAUUGACAGA---UUGA------------ ------------------------------------------------------------ ---CUGUCUGGUUA-AUUCCGUUAA-CGAGCGAGACCUGGGCG-UGCUAGCUAG--CAAU AACAGGUCUGAGAUGCCCU-UAGAUGUUCUGGGC-CGC-ACGCGUGCUACACU------- --------------------------------------GAAACG-----------AGGAA UACCUUGUAA-GCGCGGGUCAUCAUCCCG----UGCUGAAUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUGGU-CAAACC-------------- --------------------------------------------UUAAGGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGUGAGGGAAAGAUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCGGAGUAGGGCAAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGCUCGUAGCGGUGCUGACGUGCAAAUCGC-UCGUCGAACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUUCCUCCGAAGUUUCU CUC-AG-GAUAGCGGGGGUAAAG-C----GAAUGAUUAGCGUAUUAAGCA-G-AACUGGC GAUAC-GGGAUGAACCGUAAG---CACGGUUAAGGCGCCAAACGUUGAUUCAUCGAGACA GCAGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCCAAGGAGUGUGUAACAACUCA--CCU GCCGAAUGAAU--UAGCCCUGAAAAUUA-GGAGGACGUGAAGUA-U--GCGUGCGAACGU -GUAUCGAACG-AUCACUAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAU-UAGAC---C-CGUAACUUUGGGAAAAGGGUUGGCUCUAACUG CAACGGGCAAA-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAGGGCCGUGGC- CGGUGAUGACGCAAUGUGAUUUCU-----GCUCAGUGCUCUGAAUGU----CAAAGUGAA GAGA---UUCAAUCAAGCGCGGGUAAACAGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCUACUGUCCCUAUCUGCU-UCUAGCGAAACCACAGCCGAGGGAAC GGGCUCGGCGAAAUCGGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAUUC----UA AUUUU------GUGAAGCAAGUUGGGAGGUG---UAGCAU-----------AGGUGGGAG AGGAGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-U--CUACAAGACA ACGAAGG--UGUCCAAAGA-UA-AGCUCAGUGAGAACAGAAAUCUCACGUAGC--GCAAA AGGGUAAAA--GCUUGUUUUAU--U-UU--GAUUU-UC-----AGUG-CGAG----UCGA AAACGCGAAAGCGUGGCCUAUCGAUCCUUUCGAGG-------U--GUCAG-----AAAAG U-ACCACAGG-------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------- [80] 'Drosoph_me' -------------------GGGGGCAUUAGUA-UUACGACGCG-A--GAGGUGAAAUUCU UGGACCGUCGUAAGACUAACUUAAGCGAAAGCAUUUGCCAAAGAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUAGAGGUUCG AAGGCG-AUCAGAUACCGCCCUAGUUC--UA--ACCAUAAACGAUGCCAGCUAGCAAUUG GGUGUUC-------CGGGGGAAGUA-UGGU----UGCAAAGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGAAAACUU-ACCAGGUC-GAACAUAAGUGUGUAAGACAGA---UUGAUA-GCUCUUUCU CGAA--UCUAUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUCGUGGA-GU GAUUUGUCUGGUUA-AUUCCGAUAA-CGAACGAGACUCAAAUA-UAUUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUCCUGGGC-UGC-ACGCGCGCUACAAU------- --------------------------------------GAAACU-----------UGGAA UUCCCAGUAA-GUGUGAGUCAUUAACUCG----CAUUGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUACUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUUAAUUA-GGGGAGGA AAAGAAACUAACAAG---GAUUUUCUUAGU-AGCGGCGAGCGAA---------------- ----------------------------------------------G---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UACUUGAUCAGGUUGAA----GUCAGGGGA-AA- CCC------UG--AUGGAAGACCGAAACAGUUCUGACGUGCAAAUCGA-UUGUCAGAAUU GAGUAUAGGGGCGAAAGACCAAUCGAACCAUCU-AGUAGCUGGUUCCUUCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----GAAUGAUUAGAGGCCUAAGCA-G-AACUGGC GCUGU-GGGAUGAACCAAACG---UAAUGUUACG-UGCCCAAAGUUGGUUGCUUAAAACA GCAGGACGGUGAUCA-UGGAAG-UCGAAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAGCAAC--UAGCCCUUAAAAUUAGGAAGG-UACGAAGUGUU--UGGCGUAAGCCU -GCAUGGA-CU-GCCAUUGGUACAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAU-UAGAU---C-CGUAACUUCGGGAUAAGGAUUGGCUCUAACUG GCACGGACUUG-GGGAAUCCGACUGUCUAAUUAAAACAAAGCAUUGUGAUGGCCCUAG-C GGGUGUUGACACAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAAGUAAGCGCGGGUCAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCUACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGAAUAAUUAGCGGGGAAAGAAGACCCUUUUGAGCUU-GACUCUAAUC----UG GCAGU------GUAAGGAGACAUAAGAGGUG---UAGAAU-----------AAGUGGGAG AGGUAGGGA--GUUUGACUGGGGCGG---------------------------------- --------------------------------------UA-CAUCU-C--UCAAAUAAUA ACGGAGG--UGUCCCAAGG-CC-AGCUCAGUGCGGACAGAAACCACACAUAGA--GCAAA AGGGCAAAU--GCUGACUUGAU--C-UC--GGUGU-UC-----AGUA-CACA----CAGG GACAGCAAAAGCUCGGCCUAUCGAUCCUUUUGAGG-------U--GUCAG-----AAAAG UUACCAUAGGGAUAACU-GGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAAAAUUCACCAAG-CGUUGGAUU GUUCACCCAUGCA-AGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUAAGUA-CGA-GAGGAACCC------GCAGGUACGGACCAAUGG-UUAU GCCUGAACGCCUCUAAG--------------------------- [81] 'Caenorh_el' -------------------GGGGGCAUUCGUA-UCAUUACGCG-A--GAGGUGAAAUUCG UGGACCGUAGUGAGACGCCCAACAGCGAAAGCAUUUGCCAAGAAUGUCUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUCAGAGGUUCG AAGGCG-AUUAGAUACCGCCCUAGUUC--UG--ACCGUAAACGAUGCCAUCUCGCGAUUC GGAGGUC-------CGGGGGUAGUA-UGGU----UGCAAAGCUGAAACUUAAAGAAA--- UUGACGGAAGGGCACC-ACAA-GGCGUGGAGCUUGCGGCUUAAUUUG-ACUCAACA--CG GGAAAACUC-ACCCGGUCCGGACACCAUUAGGACUGACAGA---UUGAAA-GCUCUUUCU CGAU--UUGGUG-----GUU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCUGGUUU-AUUCCGAUAA-CGAGCGAGACUCUAGCC-UGCUAAAUAG--CGAU AACAGGUCUGUGAUGCCCU-UAGAUGUCCGGGGC-UGC-ACGCGUGCUACACU------- --------------------------------------GGAACG-----------AGGAA UGCCUAGUAA-GUGUGAGUCAUCAGCUCA----CGUUGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUAUCCGGG-------------------------------------- ------------------------------------------------------------ --------------------------------ACUUAAG-CAUAUCAUUUA-GCGGAGGA AAAGAAACUAAAAAG---GAUUCCCUUAGU-AACGGCGAGUGAA---------------- ----------------------------------------------G---UCUUGAAACA CGGAUUGCGGAG------------------------------------------------ UGACCCGAAA--GAUGGUGAAC-UA-UGCCUGAGCAGGAUGAA----GCCAGAGGA-AA- CUC------UG--GUGGAAGUCCGUAUCGGUUCUGACGUGCAAAUCGA-UCGAUAGACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCUUCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----UAAUGAUUAGAGGCCUAAGCA-G-AACUGGC GCUGU-GGGAUGAACCAAACG---UGGAGUUAAGGUGCCUAACGUUGGUUGAUAUUGACA GCAGGACGGUGGCCA-UGGAAG-UCGGUAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUCAAC--UAGCCCUGAAAAUCGUGAAGGCUAUGA----------GCGUAGGCUC -GGCUGGA-CU-UCCGUCAGUGCAGAUCGUAAUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAC-UAGAU---C-CGUAACUUCGGGAAAAGGAUUGGCUCCAACCG GUACGGACUCA-GGGAAUCCGACUGUCUAAUUAAAACAGAGGUGACAGAUGGUCCUUG-C GGACGUUGACUGUCACUGAUUUCU-----GCCCAGUGCUCUGAAUGU----UAAAUCGUA GUAA---UUCGAGUAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------UUAAUUG UUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCUACUGUCCCUAACUACUUUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCAAAAAUAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUU----UG ACAUU------GUGAAGAGUCAUGAGAGGUG---UAGCAU-----------AGGUGGGAG AAGCGGGGA--GUUUGACUGGGGCGG---------------------------------- --------------------------------------UA-CAUCU-A--UCAAAUCGUA ACGUAGG--UGUCCUAAGG-CG-AGCUCAGAGAGGACGGAAACCUCUCGUAGA--GCAAA AGGGCAAAA--GCUUGCUUGAU--C-UU--GACUU-UC-----AGUA-CGAG----UACA GACCGCGAAAGCGUGGCCUAUCGAUCCUUUUGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUCCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGCG-AA-GCAGAAUUCGCCAAG-CGUUGGAUU GUUCACCCACUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACA-------GCGGGUUCAAACAUUUGG-UUAU AACUGAACGCCUCUAAG--------------------------- [82] 'Plasmod_fa' -------------------GGGGACAUUCGUA-UUCAGAUGUC-A--GAGGUGAAAUUCU UAGAUUUUCUGGAGACGAACAACUGCGAAAGCAUUUGUCUAAAAUACUUC---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUAAGGGAGUG AAGACG-AUCAGAUACCGUCGUAAUCU--UA--ACCAUAAACUAUGCCGACUAGGUGUUG GAUGAUC-------UGGGGCGAGUA-UUCG----CGCAAGCGAGAAAGUUAAAAGAA--- UUGACGGAAGGGCACC-ACCA-GGCGUGGAGCUUGCGGCUUAAUUUG-ACUCAACA--CG GGGAAACUC-ACUAGUUUAAGACAAGAGUAGGAUUGACAGA---UUAAUA-GCUCUUUCU UGAU--UUCUUG-----GAU------GGUGAUGCAUGGCCGUUUUUA-GUUCGUGAAUAU GAUUUGUCUGGUUA-AUUCCGAUAA-CGAACGAGAUCUUAACC-UGCUAAUUAG--CAAC AACAGGUCUGUGAUGUCCU-UAGAUGAACUAGGC-UGC-ACGCGUGCUACACU------- --------------------------------------GAAACG-----------AGGAA UGCCUAGUAA-GCAUGAUUCAUCAGAUUG----UGCUGACUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUAAUUAA-GCGGAAGA AAAGAAAAUAACUAU---GAUUCCUUUAGU-AACGGCGAGUGAA---------------- ----------------------------------------------G---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAGA--GGCUUUGAAC-UA-AGCGUGAUGAGAUUGAA----GUCAGACGA-AA- GUC------UG--AUGGAGGAUCGAGUUGAUACUGACGUGCAAAUCGU-UCAUUUCAAUC ACGUUUAGGGGCGAAAGACUAAUCGAAAAGCCU-AUUAGCUGGUUAUUUUCGAAAGAUCU CUC-AG-GAUCGCUGGGGUAGAG-A----UAAUGAUUAGAGGAAUAAGCA-G-AACUGGC GAUGA-GGGAUGCUCCUAACG---CUUGGAUAAGGUGCCUAAAGUUGGUUCAUAAUGACA GUAGGACGGUGGUCA-UGGAAG-UCGAAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU ACCGAAUGAAC--UAGCCCUGAAAAU---------CGUGAAGCGAA--AUACGUGAGUUU -UCGUGGAAAU-CUCCCUAGUGCAGAUCUUGGUGGAAGU----AGCAACUAUAAG-GGAA GUCGG-------CAAAAAUAGAU---C-CGUAACUUCGGGAAAAGGAUUGGCUCUAACUG AAACGGACAAG-GGGAAUCCGACUGUUUAAUUAAAACAUAGCAUUGUGAAAAGCCACAAC UGGUAUUAACACAAUGUGAUUUCU-----GCCCAGUGCUUUGAAUGU----CAACUUGAU GAAA---UUCAAUCAAGCGCAGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCACUGUCCCUACUUGCUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCAAAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUU-UACUCUAGUC----UG GCUUU------GUGAAACGACUUAAGAGGUG---UAGCAU-----------AAGUGGGAG AGGUGGGGA--GUUUGACUGGGGCGG---------------------------------- --------------------------------------UA-CAUCU-G--UUAAAUAUUA ACGCAGA--UGUCCAAAGA-CA-AGCUCAAAGAGAACAGAAAUCUCUUGUAGA--CUAAA AGGGGAAAA--GCUUGUUUGAU--U-UC--UAUUU-UC-----AGAA-CAAG----UAGA AAACGUGAAAGCGUGGCCUAUCGAUCCUUUAGAGG-------U--GUCUG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCUGCCAAGCGCUCCUAGCGACGUAGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGGG-AC-GCAGAAGUCUCAAAG-UGUCGGAUU GUUCACCCGCUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGGGUA-CGA-GAGGAUUA-------GUUGGUUCAGACAAUUGG-UAAU GGCUGAACGCCUCUUAA--------------------------- [83] 'Girardi_ti' -------------------GGGGGCAUAUGUA-UGGUGGUGCU-A--GAGGUGAAAUUCU UAGAUCAUCACCAGACAAACAACUGCGAAAGCAUUUGCCAAGAAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUCAGAGGAUCG AAGACG-AUCAGAUACCGUCCUAGUUC--UG--ACCAUAAACUAUGCCAACUGACAGUUC GCGAAUC-------CGGGGGAAGUA-UGGU----UGCAAAGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGAAAUCUC-ACCCGGUCCGGACACUGUGAGGAUUGACAGA---UUGAUA-GCUCUUUCU UGAU--UCGGUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GC GAUUUGUCUGGUUA-AUUCCGUUAA-CGAACGAGACUCUCACC-UGCUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUGUCCGGGGC-CGC-ACGCGCGCUACAAU------- --------------------------------------GGAACG-----------AGGAA UUCCUAGUAA-GCGCAAGUCACUAGCUUG----CGCUGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUACUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AU-------------------------- ------------------------------------------------------------ -----------------------U-AUUG---------GUUG----G---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UUACCCGAAA--GAUGGUGAAC-UA-UGCUUGUGCAGGUUGAA----GUCAGAGGA-AA- CUC------UG--AUGGAGGACCGCCGCGGUUCUGACGUGCAAAUCGA-UCGUCGGACAU GAGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCUUCCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----GAAUGAUUAGAAGUAUAAGCA-G-AACUGGC GAUGU-GGGAUGAACCAAACA---UCCGGUUAAGGUGCCUAACGUUGGUUGAUAAAGACA GCAGGACGGUGGACA-UGGAAG-UCGUCAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUCAAC--AAGCCCUGAAAAUUA-GGAAGGUGCGAAGCAUU--AG-CGUGAGUUG -GUGUGGA-CG-GUCACGGGUACAGAUCUUGGUAGUAGU----AGCAAUUAUAAG-GGAA GUCGG-------CAAAU-UAGAU---C-CGUACCUUCGGUAAAAGGAUUGGCUCUAACUG GCAUGGACUAG-AGGAAUCCGACUGUCUAAUUAAAACAAAGCAUUGCGAUGGCUGGUGAA CGGCUUUGACGCAAUGUGAUUUCU-----GCCCAGUGCCAUGAAUGU----CAAUGUGAA GAAA---UUCAAUCAAGCGCUGGUUAACGGCGGGAGUAACU------AUGACUCUCUUCA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGUGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCUACUGUCCCUAUCUACUAUCUAGCGAAACUACAGCCAAGGGAAC GGGCUUGGAAUGUAUAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----CG ACUUU------GUGAGGAAACAUUAAAGGUG---UAGUAU-----------AAGUGGGAG AGGUGGGGA--GUUUGACUGGGGCGG---------------------------------- --------------------------------------UA-CAUCU-G--UCAAAUGGUA ACGCAGA--UGUCCCAAGG-UG-AGCUCAACCAGGACAGAAACCUGGUGUGGA--CCAAA AGGGGAAAA--GCUCACUUGAU--U-UU--GAUUU-UC-----AGUA-CGAA----UACA GACCGUGAAAGCGCGGCCUAUCGAUCCUUUUGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACAAAG-CGUUGGAUU GUUCACCCACCAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUAAGUA-CGA-GAGGAACC-------GCAGAUUCGGAUCACUGG----- -------------------------------------------- [84] 'Entamoe_hi' -------------------GGGGUGAUUCAGA-AAAUAACGGG-A--GAGGUGAAAAUCC AUGAUCGCUAUAAGAUGCACGAGAGCGAAAGCAUUUCACUCAACUGUGUC---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUAGGGGAUCG AAGACG-AUCAGAUACCGUCGUAGUCC--UA--ACUAUAAACGAUGUCAACCAAGGAUUG GAUGAUU-------CAGGGGGAGUA-UGGU----CACAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCAC--ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGAAAACUU-ACCAAGACCGAACAGUAGAAGGAAUGACAGA---UUAAGA-GUUCUUUCA UGAU--UUAUUG-----GGU------AGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUUUGUCAGGUUA-AUUCCGGUAA-CGAACGAGACUGAAACC-UAUUAAUUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGACAUCUUGGGC-CGC-ACGCGCGCUACAAU------- --------------------------------------GGAACG-----------AGGAA UUCCUUGUAA-UAUCGAGUCAUUAACUCG----AGAUGAAUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUCAAUAA-GGGAAGGA AGAAAAAAUAACAAU---GAU--------------------------------------- --------------------------------------------------UUCUUAAGUA AUGGCGAAUGAA------------------------------------------------ --ACCCGAAA--GAUGGUGAAC-UA-UACUUGAACGGAUUGAA----GCC-GAAGA-AA- CUU------UG--GUGGAAGAUUCACGCAGUGUUAACGUGCAAAUUAC-UUGUCAUAUUU GAGUAUAGGGGCGAAAGACUCAUCGAACUAUCU-AGUAGCUGGUUCCACCUGAAUAUUCC CUU-AG-GAAGGUCAAGGUAAAG-A----UAAUGAUUAGGUGUAUAAGCA-G-GACUGGC GAUGC-GGGAUGAACCGAACG---UCGAGAUAAAGUGCCAAAAAUUCAUUCAUAUUGACA AUAGGACGGUGGCCA-UGGAAG-UCGGAAACCGCUAAGGAAUGUGUAACAACUCA--CCU AUCGAAUGAAU--GAGUCCUGAAAAUAA----CGAUUUAAAGU------------AAUUU -AGAUUGAACU-GUCCUUAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAACA-UAGCU---C-UGUAAGUUAGCAAGAAAGAGUAGCUCUAACU- UUAAAGGUUAG-GGGAAUCCGACUGUUUAAUAAAAACAUAGCAUUCUGAUAAAUCUAAAA GGUUCAUUACAGAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAGGUAAU GAAA---UUUACUUAAGCGCGGGUUAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUC A---C--CGUGAUUCCCACUGUCCCUAUCUGCAAUCUAGUGAAACCACAGUCAAGGGAAC GGGCUUGAUUGGAACGGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAAUU----UA UCAU-------GUGAAAUCGAUUUUUUGGUA---UAGGCU-----------AGGUGGGAG AGACGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUCU-G--UUACAAGAUA ACGCAGG--UGUCCAAAGA-UG-AACUCAAUGAGGACAGAAACCUCAUGUAGA--AUAUA AGGGUAUAA--GUUCAUUUGAU--U-AU--UGAUU-CC-----AGUA-CAAU----CAAU AACUCUGAAAUGAUGGCCUAACGAUCCCUAAGGGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGCUCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCCAUUUC-AA-GCAGAAUUGAAAAAA-GGUAUGAUU GUUCACCAUUUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACCGAGUA-CGA-GAGGAACC-------GUUGUGUCACGCCACUGG-UAAU GGCUGAAAGCCUCUCAA--------------------------- [85] 'Trypano_cr' -------------------GGGGGAGAACGUA-CUGGUGCGUC-A--GAGGUGAAAUUCU UAGACCGCACCAAGACGAACUACAGCGAAGGCAUUCUUCAAGGAUACCUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CCUCAAU-----CAA--GAACCAAA-GUGUGGGGAUCG AAGAUG-AUUAGAGACCAUUGUAGUCC--AC--ACUGCAAACGAUGACACCCAUGAAUUG GGGAGUC-------AGGGGGGAGUA-CGUU----CGCAAGAGUGAAACUUAAAGAAA--- UUGACGGAAUGGCACC-ACAA-GACGUGGAGCGUGCGGUUUAAUUUG-ACUCAACA--CG GGGAACUUU-ACCAGAUCCGGACAGGGUGAGGAUUGACAGA---UUGAGU-GUUCUUUCU CGAU--CCCCUG-----AAU------GGUGGUGCAUGGCCGCUUUUG-GUCGGUGGA-GU GAUUUGUUUGGUUG-AUUCCGUCAA-CGGACGAGAUCCAAGC--UGCCCAGUAG--CAAC AGCAGGUCUGUGAUGCUCC-UCAAUGUUCUGGGC-GAC-ACGCGCACUACAAU------- --------------------------------------GUAACG-----------AGGAA UGUCUCGUAG-GCGCAGCUCAUCAAACUG----UGCCGAUUACGUCCCUGCCAUUUGUAC ACACCGCCCGUCGUUGUUUCCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUUACUAA-GCGGAGGA AAAGAAAACAACCGU---GAUUCUCUCAGUCAGCGGCGAGCGAA---------------- ----------------------------------------------G---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GGUGGUGAAC-UA-UGCCUGAACAAGGUGAA----GCCCGGGGA-AA- CUC------GG--GUGGAGGCCUGUAGCGAUGCUGACGUGCAAAUCGC-UCGCAUGAUUU GGGUAUCGGAGCGAAAGACUCAUCGAACCACCU-AGUAGCUGGUUCACAUCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----AAAUGAUUAGAGGCAUAAGCG-G-AGCAGGC GAUGC-GGAAUGAACCGCUUA---GG-AUAUGUGGCGUCAAAAGUUGGUGGAUAGGGACA GUUGGACGGUGGCCA-UGGAAG-UCGGCAUCCGCUAAGGAGUGUGUAACAACUCA--CCA ACCGAAUCCAC--CGGCCCCGAAAAUAG-AUGUGGCGUGAAGCUGA--UGGCGUGAGCCU -CAGAUGGACA-GCCUCUAGUGCAGAUCUUGGUUGGCGU----AGCAAAGAUCAG-GGAA GUCGG-------CAAAA-UAGAU---G-CGUAAGUUCGCAAGAAGCAUUGGCUCUAACUG CUUACGGC--G-GGGAAUCCAACUGUAUAAUUAAAACAUAGGUUUGUGAUGCAUCCAAGU GGUGUAUGUCGCAAACUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAACGUGAC GAGA---UUCACCGACGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCUU--------------------------------CCAAUUA GAGACGCGC----------------------------------------AUGAAUGGAUU A---A--UGAGAUUCCCUCUGUCCCGAGUUACUAUCUAGCGAAACGACAGUCAAGGGAAC GGACUUGAAGGGCUAAGCGGGGAAAGAAGACCCUGUUGAGUUU-GACUCCAGUC----UG GCUCU------GUGCGGCGACAUCUGAGGUG---UAGUAU-----------AGGUGGAAG AGAUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-UAUCU-G--UUACACGACA ACGCAGG--UGUCCUAAGG-CG-AGCUCAGUGGGAACAGAAAUCUCACGUAGA--ACACA AGCGUAAAA--GCUUGCUUGAU--U-AA-CGAUUU-CC-----AGUA-CGAA----UCGA GACUGCGAAAGCAAGGCC-AGCGAUCCUUUGGAGG-------U--GUCAG-----AAUAA UUACCACAGGGAUAACU-GGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAACCUAGCG-CC-GCAGAAGACGCUAAG-GGUUGGAUU GUUCACCCACUGACAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUGG UUUUACCCUACUAAAGC-GGA-AGCCGGUCG------UUU----CUGG--GCUGG-UACU --UGGUACGGUCACCAC--------------------------- [86] 'Trypano_br' -------------------GGGGGAGAACGUA-CUGGUGCGUC-A--GAGGUGAAAUUCU UAGACCGCACCAAGACGAACUACAGCGAAGGCAUUCUUCAAGGAUACCUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CCUCAAU-----CAA--GAACCAAA-GUGUGGGGAUCA AAGAUG-AUUAGAGACCAUUGUAGUCC--AC--ACUGCAAACCAUGACACCCAUGAAUUG GGGAAUC-------AGGGGGGAGUA-CGUU----CGCAAGAGUGAAACUUAAAGAAA--- UUGACGGAAUGGCACC-ACAA-GACGUGGAGCGUGCGGUUUAAUUUG-ACUCAACA--CG GGGAACUUU-ACCAGAUCCGGACAGGGUGAGGAUUGACAGA---UGGAGU-GUUCUUUCU CGAU--CCCCUG-----AAU------GGUGGUGCAUGGCCGCUUUUG-GUCGGUGGA-GU GAUUUGUUUGGUUG-AUUCCGUCAA-CGGACGAGAUCCAAGC--UGCCCAGUAG--CAAC AGCAGGUCUGUGAUGCUCC-UCAAUGUUCUGGGC-GAC-ACGCGCACUACAAU------- --------------------------------------GUAACG-----------AGGAA UGUCUCGUAG-GCGCAGCUCAUCAAACUG----UGCCGAUUACGUCCCUGCCAUUUGUAC ACACCGCCCGUCGUUGUUUCCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUUACUCA-GCGGAGGA AAAGAAAACAACCGU---GAUUCUCUCAGUCAGCGGCGAGCGAA---------------- ----------------------------------------------G---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GGUGGUGAAC-UA-UGCCUGAACAAGGUGAA----GCCCGGGGA-AA- CCC------CG--GUGGAGGCCUGUAGCGAUGCUGACGUGCAAAUCGC-UCGUACGAUUU GGGUAUCGGAGCGAAAGACUCAUCGAACCACCU-AGUAGCUGGUUCACGUCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----AAAUGAUUAGAGGCAUAAGCG-G-AGCAGGC GAUGC-GGAAUGAACCGCUUA---GGGAUAUGUGGCGUCAAAAGUUGGUGGAUAGGGACA GUUGGACGGUGGCCA-UGGAAG-UCGGCAUCCGCUAAGGAGUGUGUAACAACUCA--CCA ACCGAAUCCAC--CGGCCCCGAAAAUAG-ACGUGGCGUGAAGCCGA--UGGCGCGAGCCU -CGGAUGGACC-GCCUCUAGUGCAGAUCUUGGUUGGCGU----AGCAAAGAUCAG-GGAA GUCGG-------CAAAA-UAGAU---G-CGUAAGUUCGCAAGAAGCAUUGGCUCUAACUG CUUACGGC--G-GGGAAUCCAACUGUAUAAUUAAAACAUAGGUUUGUGAUGCAUCCAAGU GGUGUAUGUCGCAAACUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAACG---- -AGA---UUCACCGACGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCUU--------------------------------CCAAUUA GAGACGCGC----------------------------------------AUGAAUGGAUU A---A--UGAGAUUCCCUCUGUCCCGAGUUACUAUCUAGCGAAACGACAGUCAAGGGAAC GGACUUGAAGGGCUAAGCGGGGAAAGAAGACCCUGUUGAGUUU-GACUCCAGUC----UG GCUCU------GUGCGGCGACUUUGGAGGUG---UAGUAU-----------AGGUGGAAG AGAUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-UAUCU-G--UUACACGACA ACGCAGG--UGUCCUAAGG-CG-AGCUCAGUGGGAACAGAAAUCUCACGUGGA--ACACA AGCGUAAAU--GCUUGCUUGAU--U-AA-CGAUUU-CC-----AGUA-CGAA----UCGA GACUGCGAAAGCAAGGCC-AGCGAUCCUUUGGAGG-------U--GUCAG-----AAUAA UUACCACAGGGAUAACU-GGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAACCUAGCG-CC-GCAGAAGACGCUAAG-GGUUGGAUU GUUCACCCACUGACAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUGG UUUUACCCUACUAAAGC-GGA-GGCAGUCCG------UUUUUUUCUGG--GUCUG-UAUU AAUAAUAUUAUUAUUAU--------------------------- [87] 'Dictyos_di' -----------------------------AUA-UUGGUGGGCG-A--GAGGUGAAAUUCG UUGACCCUAUCAAGAUGAACUUCUGCGAAAGCAUUCACCAAAUACUUCCC---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUAAU-----CAA--GAACGAAA-GUUUGGGGAUCG AAGACG-AUCAGAUACCGUCGUAGUCC--AA--ACUAUAAACUAUGUCGACCAGGGAUCG GUUAAUC-------CGGGGGGAGUA-UGGU----CGCAAGUCUGAAACUUAAAGGAA--- UUGACGGAAGGGCAC--ACAAUGGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACU--CG GGAAAACUU-ACCAAGCUAAGAUAUAGUAAGGAUUGACAGA---CUAAAA-GAUCUUUCA UGAU--UCUAUA-----AGU------GGUGGUGCAUGGUCGUUCUUA-GUUGGUGGA-GC GAUUUGUCUGGUCA-AUUCCGAUAA-CGGACGAGACCUCGACC-UGCUAACUAG--CAAU AACAGGUCUGUGAUGCCCU-UAGAUACCUUGGGC-CGC-ACGCGCGCUACAAU------- --------------------------------------GUAACG-----------AGGAA UUCCUUGUAA-GCGUAAGUCAUUACCUUA----UGCUGAAUAUGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUCAGUAA-GCGGAGGA AAAGAAACCAACUAG---GAUUCCGUCAGU-AACGGCGAGUGAA---------------- ----------------------------------------------G---UCUUGAAACA CGGAUCAAGGAG------------------------------------------------ GCACCCGAAA--GGUUGUGAAC-UA-UGCCUGAGGAAGGCGAA----GUCAGGGGA-AA- CUC------UG--AUGGAAACUUGUCGCAAUGCUGACGUGCAAAUCGC-UUGUCUAACUU GGGUAUAGGGGCGAAAGACUAAUCGAACAACCU-AGUAGCUGGUUCCUUCCGAAGUUUCC CUC-AG-GAUAGCUGGUGUAAAG-A----CAAUGAUUAGCAGUUUAAGCA-G-AACUGGC GAUGU-GGGUUGAACCAAAUA---UUGGGAUAAGACGUCUAACGUUAGUUCAUUAAGACA GCAGGACGGUGGCCA-UGGAAG-UCGGUAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCAAAUGGAC--UAGCCCUGAAAAU---------CGUGAAGC-UU--GAAUGUGAAUUC -GAGUGGA-UU-GUCUUUAGUGCAGAUCUUGAUGGUAGU----AGCAAAUAUAAA-GGGA AUCAA-------CAAAACCAG-U---C-UAUAACUUCAGGGUAAAGGUUAGCUCUAACUG UGACGAUCACC-GGGAAUCCAACUGUUUAAUUAAAACAAAGCAUUGCGAUAAGCUUAAAA -GCUUUUGACGCAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAGA---UUCAACCUAGCACGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUC A---A--UGAGAUUCCCACUGUCCCUAACUACUAUACAGCGAAACCACUGCAAGGGGAAC GGGCCUUGCAAAAACAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----UG AUAUU------GCAUAGUGACCUAAAAGGUG---UAGAAU-----------AGGUGGGAG AGGUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CAUUU-G--UUAAAAGAUA ACGCAAG--UGUCCAAAGG-CA-GGCUCAGUGAGAACAGAAAUCUCACGUAGA--GUAAA AGGGCAAAA--GCCUGCUUGAU--U-CU--GAUUU-UC-----AGUAACUAA----UCGG AACUGGGAAACCAAGGCCUAUCGAUCCUUUAGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGCUCAUAGCGACGCUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCUUAUCAUUGUG-AA-GCAGAAUU----------------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------- [88] 'Gracila_ve' -------------------GGGGGCAUUCGUA-UUCCGACGUC-A--GAGGUGAAAUUCU UGGAUUGUCGGAAGACGAACAGCUGCGAAAGCGUCUGCCAAGGACGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CAUUGAU-----CAA--GAACGAAA-GUAAGGGGAUCG AAGACG-AUCAGAUACCGUCGUAGUCU--UU--ACUAUAAACGAUGAGGACUGGAGAUCG GAUAAUC-------UGGGGGGAGUA-UGGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCAUC-ACCG-GGUGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGAAAACUU-ACCAGGUCAGGACAUAGUAAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUAUG-----GUU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GU GAUCUGUCUGGUUA-AUUCCGUUAA-CGAGCGAGACCUGGGCG-UGCUAGCUAG--CAAU AACAGGUCUGAGAUGCCCU-UAGAUGUCCUGGGC-CGC-ACGCGUGCUACACU------- --------------------------------------GAAACG-----------AGGAA UACCUUGUAA-GCGCGGGUCAUCAUCCCG----CGCUGAAUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUA-----CAAGGU-------------- --------------------------------------------UUCCAAAGCAGAA--- -----------AACUGAAC-CUCU-GC----------AACUACAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAGUAGGGCGAA----GCCAGAAGA-AA- UUC------UG--GUGGAGGCUCGUAGCGGUGCUGACGUGCAAAUCGC-UCGUCGAACUU GGGUAUAGGGGCGAAAGACUAAUCGAACCAUCU-AGUAGCUGGUUCCCCCCGAAGUUUCU CUC-AG-GAUAGCGGGGGUAAAG-C----GAAUGAUUAGUGCAUUAAGCA-G-AACUGGC GAUGC-GGGAUGAACCGAAAG---CGUAGUUAAGGCGUCAAAUGUUGGUUCAUCGAGACA GCAGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUGAAG--UAGCCCUGAAAAU-A-GGGGGGCGUGAAGCACU--GCGUGCAAACGC -GUGUGGAACG-GUCACUAGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAU-UAGAC---C-CGUAACUUUGGGAAAAGGGUUGGCUCUAACUG CAACGGGCAAA-GGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAGGGCCGGGGA- CGGUGAUUACGCAAUGUGAUUUCU-----GCUCAGUGCUCUGAAUGU----CAAAGUGAA GAGA---UUCAAUCAAGCGCGGGUAAACAGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCUACUGUCCCUAUCUGCU-UCUAGCGAAACCACAGCCGGGGGAAC GGGCCCGGCGAAAUCGGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAUUC----UA AUUUU------GUGGAGCAAGUUGGGAGGUG---UAGCAU-----------AGGUGGGAG AGGAGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------UA-CAUCU-U--CUACAAGACA ACGAAGG--UGUCCAAAGA-UC-AGCUCAGUGAGAACAGAAAUCUCACGUAGC--GCAAA AGGGUAAAA--GCUGGUUUGAU--U-UC--GAUUU-UC-----AGUG-CGAG----UCGA AAACGCGAAAGCGUGGCCUAUCGAUCCUUUCGAGG-------U--GUCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGCG-UA-GCAGAAUGCGCAAAG-UGUCGGAUU GUUCACCCGCCAACAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUAUCCUACCGAGUA-CGA-GAGGAACG-------CUUAAUUCAGACCUCUGG-UUAG AAAGG--------------------------------------- [89] 'Ciona_in' -------------------GGGGGCAUUCGUA-CUGUGCCGUU-A--GAGGUGAAAUUCU UGGAUCGGCGCAAGACGAACGACUGCGAAAGCAUUUGCCAAGAAUGUUUU---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CUUUAAU-----CAA--GAGCGAAA-GUCAGAGGUUCG AAGACG-AUCAGAUACCGUCCUAGUUC--UG--ACUAUAAACGAUGCCAACUAGCGAUCG GGGAGUC-------CGGGGGAAGUA-UGGU----UGCAAAGCUGAAACUUAAAGGAA--- UUGACGGAAGGGCACC-ACCA-GGAGUGGAGCCUGCGGCUUAAUUUG-ACUCAACA--CG GGAAAUCUC-ACCCGGCCCGGACACAGUGAGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--UCUGUG-----GGU------GGUGGUGCAUGGCCGUUCUUA-GUUGGUGGA-GC GAUUUGUCUGGUUA-AUUCCGAUAA-CGAACGAGACUCUGGCU-UGCUAAAUAG--CAAU AACAGGUCUGUGAUGCCCU-UGAGUGUUCGGGGC-CGC-ACGCGCGCUACACU------- --------------------------------------GAAACG-----------AGGAA UUCCCAGUAA-GCGCGAGUCAUUAGCUCG----CGUUGAUUACGUCCCUGCCCUUUGUAC ACACCGCCCGUCGCUACUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AU-------ACAAUACUAA-GCGGAGGA AAAGAAACUAACGAG---GAUUCCCUCAGU-AACGGCGAGUGAAGUGGCGAGACCGA--- -----------UAGCGAAC-AAGU-ACCGUGAGGGAAAGUUGAAAAG---UCUUGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GAUGGUGAAC-UA-UGCCUGAGGAGGUUGAA----GCCAGAGGA-AA- CUC------UG--GUGGAGGACCGUAGCGAUUCUGACGUGCAAAUCGA-UCGUCAAAUUU GGGUAUAGGGGCGAAAGACUAAUCGAACCGUCU-AGUAGCUGGUUCCCUUCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----GAAUGAUUAGAGGUCUAAGCA-G-GACUGGC GAUGC-GGGAUGAACCGAACG---CGGGGUUAAGGCGCCCGACGUUGGUUGAUAUAGACA GCAGGACGGUGGCCA-UGGAAG-UCGGAAUCCGCUAAGGAGUGUGUAACAACUCA--CCU GCCGAAUCAAU--CAGCCCUGAAAAUAG-GAGGGCCGCGAAGCCUA--GGGCGCGAGCCC -GGGUGGAGCA-GCCGUCGGUGCAGAUCUUGGUGGUAGU----AGCAAAUAUAAG-GGAA GUCGG-------CAAAC-UAGAU---C-CGUAACUUCGGGAAAAGGAUUGGCUCUAACUG GUACGGACCAG-GGGAAUCCGACUGUUUAAUUAAAACAAAGCUUUGCGAUGGCCGUCACC UGGUGUUGACGCAAUGUGAUUUCU-----GCCCAGUGCUCUGAAUGU----CAAAGUGAA GAAA---UUCAACCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAU--------------------------------CUAAUUA GUGACGCGC----------------------------------------AUGAAUGGAUU A---A--CGAGAUUCCCGCUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAAC GGGCUUGGCAGAAUUAGCGGGGAAAGAAGACCCUGUUGAGCUU-GACUCUAGUC----CG ACUUU------GUGAAGAGACAUGAGAGGUG---UAGGAU-----------AAGUGGGAG AGGCGGGGA--GUUUGACUGGGGCGG---------------------------------- --------------------------------------UA-CAUCU-G--UCAAAGAGUA ACGCAGG--UGUCCUAAGG-UG-AGCUCAGUGAGGACGGAAACCUCGCGUAGA--GCAAA AGGGCAAAA--GCUCACUUGAU--U-UU--GAUUU-UC-----AGUA-UGAA----UACA GACCGCGAAAGCGUGGCCUAUCGAUCCUUUUGAGG-------U--GCCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAUCAUUGUG-AA-GCAGAAUUCACCAAG-CGUUGGAUU GUUCACCCACUAAUAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACC-------GCAGAUUCAGACAUUUGG-UUAU GACUGAACGCCUCUAAG--------------------------- [90] 'Euglena_gr' -------------------GGGGUGAAAGAUA-CGGGAGCGCC-A--GAGGUGAAAUUCU UAGAUCGCUGCCAGAUCCACUGCAGCGAAGGCGUUCUGCAAGUGCACGUC---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------CGUCGAU-----CAA--GAAUGAGA-GUUCGGGGAGCA AAGAUG-AUCAGACACCGUCGUAGUCCGGCC--ACUGUAAACGAUGCCGGCCAGGCCUUG GCAGAUC-------AGGGGGGAGUA-CUGU----CGCAAGGCUGAAACUUAAAGGAA--- UUGACGGAAUGGCACC-ACAA-GGCGUGGAGUAUGCGGCUUAAUUUG-ACUCAACG--CG GGGAAUGUU-ACCAGGUCAGGACGCAACUGGGAUUGACAGA---UUGAGA-GCUCUUUCU UGAU--CUUGUG-----GAC------GGUGGUGCAUGGCCGCUCCUG-AUUGGUGGA-GU GAUUUGUCUGGUUG-AUUCCGAUAA-CGAGUGAGACAUCUGCC-U-CCCACUAG--CAAC AGCAGGUCUGUGAUGCUCC-CAGAUGUCCUGGGC-CGC-ACGCGCACUACAUU------- --------------------------------------GUAACG-----------UGGAA UGCCUAGUAU-GCCUGGGUCAUCAGCCCA----GACCGAUUGUGUCCCUGCCAUUUGUAC ACACCGCCCGUCGUUGCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------AUUUAAG-CAUAUCACUCA-GUGGAGGA ACAGCAAGCAACCUC---GAUUGCUGCAGU-AAUGGCGAAUGAAC--------------- --------------------------------------------GAG---UCUCGAAACA CGGACCAAGGAG------------------------------------------------ UCACCCGAAA--GGUGGUGAAC-UA-UACCGUUCUACGGUGAA----GCCAUGGGA-AA- CUG------UG--GUGGAAGCCGGUCGCUGUUCUGACGUGCAAAUUGUGUAGCCUGAGUG CGGCAUAGGGGUGAAAGGCCAAUCGAGCCACCU-AGUAGCUGGUUCCCUUCGAAGUUUCC CUC-AG-GAUAGCUGGGGUAAAG-C----AACGCAUGAGAGGCCUAAGCA-G-UGCUGGU GAUGC-GGGGUGCUCCGAGAG---CAGACUUACAGAUCCCGAGGUUGCUUACUACGGAUA GCAGGUCGGUGGCCA-UGAAGG-UUGGAACCCGCUGAGGAAUGUGUAACAACUCA--CCU GCCGAAGUGCG--CAGCUCCGAAAAUAU-----CGUGUCCGGCUUG--AGGCGUUGCCCA -GAGCAGAUUU-GGUUGUAGUAGCGAGUACUCCACCUGG----AGAGGAGUUAAG-GGAA GUCGG-------CAAAC-UGGCC---G-UGCACCUUUGGAAGAUACGGUGGCUCCAACUG UUGCUGUGCAG-GGGAAUCUGACUGUUUAAUUGAAACCCAGCUUUGUGAAGGGACCAGCU GGCUGGUUCCGUGAGGUGACUUCU-----GCCCAGUGCUCUGAUUGU----CAAUGCGAA GAGA---UUCAGCCAAGCGCGGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCAA--------------------------------CCAAUUA UUGACGCGC----------------------------------------AUGAAUGGAUC A---A--CGAGAUUCCUGCUGUCCCUAGUCGCUGUCUGGUGAACCAACAACCAAGGGAAC GGGCUUGGAUGUGUCAGCGGGGAAAGAAGACCCUGUUGAGUUU-GACUCUAGUU----UG AUACU------GUGCAACAACAUGUGGGGCG---UAGCAU-----------AGGUGGGAG AGUUGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CA-CGCCU-U--UUACAACACA ACGAAGG--CGUCCUGAAG-CAUUGCUCAGGCAGAACAGAAAUCUCCCAGGGA--GGAGA AGGCCAAAG--GUGCUGCUGAU--G-CUGCGACUC-UC-----AGUA-CGAG----UCCG AAACGUGCAAUCGUGGCCUAACGAUCCUUUGGAGG-------U--GUCAG-----AAAAA UUACCACAGGGAUAACU-GGCUUGUGGCUGCCAAGCGUUCAAAGCGACGUCGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUAGCUUCCCA-CC-CGCAGCCGAGUGGAAGAGUUGGAUU GUUCACCCACCAACAGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUGG UUUUACCCUCCUGAGUA-CGA-GAGGAACC-------CUUGUGGCACUCCCCUGG-UACU GACUGGACGCAUCUUAA--------------------------- [91] 'Giardia_ar' -------------------GGGGGCAUUAGUA-CCGGACGGGG-A--CGGGUGAAACAGG AUGAUCCCUCCGAGACUCCCCGCGGCGCAGGCGUCUGCCAGGGCCACCUC---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------UGUCGAU-----CCA--GGGCGAAG-GCCGGGGGCGAG AAGGCG-AUUAGACACCACCGUAUUCC--CG--GGCGUAAACGGUGCCGCCCCGGCGCCG -----UC-------UGGGGGGAGUA-UGGC----CGCAAGGCUGGAACUUGAAGGCA--- UUGACGGAGGGGUACC-ACCA-GAUGUGGAGUCUGCGGCUCAAUUUG-ACUCAACG--CG AACA-CCUU-ACCAGGCCCGGACGCGCGGAGGAUCGACAG----CCGGGU-GCGCUUUCG UGAU--CGCGCG-----GGC------GGUGGUGCAUGGCCGUUCCCA-GCCCGUGGC-GC GAGCCGUCUGCUUC-ACUGCGACAA-CGAGCGAGACCCCGGC---------CAC--CGAU AACAGGUCUGUGAUGCCCU-CAGACGCCCUGGGC-CGC-ACGCGUACUACACU------- --------------------------------------GGAACC-----------CGGAA UAUCUCGUAG-GCGCGUGUCCCCAACGCG----CGCCGGAUGCGUCCCUGCCCCUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------ACUUAAG-CAUAUCAGUAC-GCCCAGGA GGAGACACCAACAGG---GAUUCCCG--GU-AGCGGCGAGCGACGCGCCGAGACCGA--- -----------UAGCGGACCAAGU-AGUGCGAACGAACGGUGAAAAG---UCUCGAAACA CGGACCGAGGAG------------------------------------------------ CCGCCCGAAA--GGCGGUGAUC-UA-CGCCCGGCCAGGGCGAA----GCCAGGCGA-AA- GCC------UG--GUGGAGGCCCGCCGCGGUGCUGACGUGCAAAUCGC-UCGUCCGAGCC GGGCGUGGGGGCGAAAGACUCAUCGAACCGCCU-GGUAGCUGGUUGCCUCCGAAAUUUCU CCC-AG-GAUAGCCGCGGUAGGG------CCGCGACCGGCGGGAGGCGUGUG-GGCCUCU CCUGG-UAAGCAGGACGGGCG---AGACGGGAUGAU-CCGGAAGUCGGUCGGUCCUGACA GCUGGAAGGUGGCCC-UAGUAG-UCGGAAUCCUCCAAGGAGUGUGUAACAACCCA--CCA GCCGAAUCGAC--GGGCCCGGAAAAUUA-GGAGGCCGCGAAG-GCG--GGGGGCGACCCG -CGCUGGACCG-GGCGCCGGUGCAGAUCUCGGUAGCAGU----AGCCACUAUCAG-GGAA GUCGG-------CAAGU-UAGCU---C-CGUAACCUCGGGAUAAGGAGUGGCUCUAACUG GAACGGACUCG-GGGAUCCCGACUGUCUAAUAGCAACACAGCGUCGUGC-GAGUCCUGAU CGAUGCGGACACGACGUGAUUUCU-----GCCCAGUGCCACGACCGU----CA--GUGAA GAGG---UUCACCCAAGCCCUGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCGG--------------------------------GUAAUUU CCGACGUGC----------------------------------------AUGAAUGGACC A---A--CGAGGAUCCCACUGUCCCGAGUCACGCCUCCGCGAACCUACAGACCCGGGAAC GGGCGGGUGCCGGUCGGCGGGGCAAGAAGACCCUUUUGAGCUU-GACUCCAGCC----CG GCCCU------GGGGGGCGGGGUCACCGGCG---CACGGU-----------ACAGGGGAG GGGCGGGGA--GUUUGGCUGGGGCGG---------------------------------- --------------------------------------CG-CGCCU-G--CUAGACAGCA CCGCAGG--CGUCCCACGG-GCGAGCUCAGCGAGGACGGAAACCUCCCGUGGA--GCAGA AGGGCAAAA--GCUCGCCCGAC--C-CG--CGCCA-CC-----AGUC-CCGG----CGCG CG--GCGAAAGCGCGGCCUACCGAUCCUUCGGAGG-------U--GACAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCCGCCAAGCGCCCGCAGCGACGCGGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUACCGUCCGC-GC-GCAUCGGCGCGGAAG-CGUCGGAUU GUUCACCCGCUCC-AGGGA---ACGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUAUCCUACCGAGUA-CGA-GAGGAACG-------CCCGCCGCGGCGCGCCGG-CUAG CGCUGAACGCCUCUAAG--------------------------- [92] 'Giardia_in' -------------------GGGGGCACCGGUA-CCGGCCGGGG-A--CGGGUGAAACAGG AUGAUCCCGCCGAGACCGCCGGCCGCGCAGGCGCCUGCCAAGACCGCCUC---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------UGUCAAU-----MAA--GGGCGAAG-GCCGGGGGCUAG AAGGCG-AUCAGACACCACCGUAUUCC--CG--GCCGUAAACGGUGCCGCCCCGCGGCCG -----UC-------UGGGGGGAGUA-UGGC----CGCAAGGCUGAAACUUGAAGGCA--- UUGACGGAGGGGUACC-ACCA-GACGUGGAGUCUGCGGCUCAAUCUG-ACUCAACG--CG CGCA-CCUC-ACCAGGCCCGGACGCGCGGAGGACCGACAG----CCGGGC-GCGCUUUCG CGAU--CGCGCG-----GGC------GGUGGUGCAUGGCCGCUCCCA-GCCCGUGGC-GC GAGCCGUCUGCUCC-AUUGCGACAA-CGAGCGAGACCCCGGC---------CGC--CGAU AGCAGGUCUGUGAUGCCCU-CAGACGCCCUGGGC-CGC-ACGCGCGCUACACU------- --------------------------------------GGCACC-----------AGGAA UGUCUUGUAG-GCGCCCGCCCCCACCGCG----CGCCGGACGCGUCCCUGCCCCUUGUAC ACACCGCCCGUCGCUCCUACCG-------------------------------------- ------------------------------------------------------------ --------------------------------ACUUAAG-CAUAUCAGUAC-GCCCCGGA GGAGAAACCAACCGG---GAUUCCCC--GU-AGCGGCGAGCGACGCGCCGGGACCGA--- -----------UAGCGGACCAAGU-AGCGCGAGCVAACGGUGAAAAG---UCUCGAAACA CGGACCGAGGAG------------------------------------------------ CCGCCCGAAA--GGCGGUGAUC-UA-UGCCCGGCGAGGGCGAG----GCCGGGCGA-AA- GCC------UG--GUGGAGGCCCGCCGCGGUGCUGACGCGCAGAUCGC-UCGUCGGAGCC GGGCAUGGGGGCGAAAGACUCAUCGAACCGCCU-GGUAGCUGGUUGCCUCCGAAAUGUCU CCC-AG-GACAGCCGCCGUAGAG------CGCUGGCCGGCGGGAGGCGCGUG-GGCCCCU CCUGG-UAAGCAGGACGGGCG---AGGCGGGACGAU-CCGGACGUCGGCCGGUCCCGACA GCUGGAAGGUGGCCC-CAGAAG-UCGGCAUCCUCCAGGGAGUGUGUAACAACCCA--CCA GCCGAAUCGGC--CGGCCCGGAAAAUUA-GGAGGCCGCGAAG-GCG--GCGCGCAGGCCC -CGCCGGACCG-GCCUCUGGUGCAGAUCUCGGCAGCAGU----AGCCGCUAUCAG-GGAA GUCGG-------CAAGC-CGGCU---C-CGUAACCUCGGGAAAAGGAGUGGCUCUAACUG GAACGGACGCG-GGGAUCCCGACUGUUUACUAGAAACACAGCGUCGCGA-GGGCCGCACC CGGCGCUGGCGCGACGUGAUUUCU-----GCCCAGUGCCACGACCGU----CA--GUGAA GCGA---UCCGCCGAAGCCCUGGUAAACGGCGGGAGUAACU------AUGACUCUCUUAA GGUAGCCAAAUGCCUCGUCGG--------------------------------GCAAUUU CCGACGUGC----------------------------------------AUGAAUGGACC A---A--CGAGGAUCCCACUGUCCCGAGCCGCGCCUCCG-GAGCCUCCAGCCUCGGGAAC GGGCGAGGGCCGGCCAGCGGGGCAAGAAGACCCUUUUGAGCUU-GACUCCAGCC----CG GGCCU------GUGGGGCGGGGCGGCCGGCG---CAGCGC-----------ACAGGGGAG GGGCGGGGA--GUUCGGCUGGGGCGG---------------------------------- --------------------------------------CG-CGCCU-G--CUACACCGGA CCGCAGG--CGUCCCACGG--CGGGCUCAGCGAGGACGGAGACCUCCCGCGGA--GCAGA AGGGCACAA--GCCCGCCCGAC--C-CG--CGCCC-CC-----CGUG-CCGG----CGCG GGCCGCGAAAGCGGGGCCUACCGAUCCUUCGGAGG-------U--GGCAG-----AAAAG UUACCACAGGGAUAACU-GGCUUGUGGCCGCCGAGCGCCCGCAGCGACGCGGCUUUUUGA UCCUUCGAUGUCGGCUCUUCCUACCGUCCGC-GC-GCACCGGCGCGGAAG-CGUCGGAUU GUUCACCCGUUCA-AGGGA---UCGUGAGCUGGGUUUAGACCGUCGUGAGACA-GGUUAG UUUUACCCUACUGAGUA-CGA-GAGGAACG-------CC-GCCGCGGGCCGCCAG-CCUG CGCUGACCGCCUCUAAG--------------------------- ; END;